Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.0e-227 793.1 415 100.0
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 8.9e-131 471.1 390 71.5
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.2e-122 444.1 417 66.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 6.3e-76 288.9 411 48.7
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 4.1e-75 286.2 410 49.0
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 5.3e-75 285.8 411 47.9
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 5.9e-66 255.8 421 45.8
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 4.0e-46 189.9 469 37.1
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 8.2e-44 182.2 454 37.0
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 8.0e-39 165.6 442 36.4
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.4e-37 159.8 476 34.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 4.4e-37 159.8 458 34.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.3e-36 158.3 448 37.5
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 8.3e-36 155.6 445 35.5
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.1e-35 155.2 458 33.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.8e-35 154.5 426 36.2
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.8e-35 154.5 465 34.8
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 3.1e-35 153.7 451 34.6
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 3.1e-35 153.7 451 35.0
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 1.6e-34 151.4 467 34.5
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 7.7e-34 149.1 469 32.6
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.9e-32 144.4 474 32.5
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.2e-32 143.7 430 33.5
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 4.2e-32 143.3 474 34.2
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 9.5e-32 142.1 434 33.2
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 9.5e-32 142.1 480 31.0
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 1.2e-31 141.7 485 31.8
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.1e-31 141.0 436 34.4
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 3.6e-31 140.2 487 32.4
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 4.0e-30 136.7 443 31.6
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 6.8e-30 136.0 500 31.8
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.2e-29 135.2 468 31.6
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.4e-29 133.7 441 31.7
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 4.4e-29 133.3 445 30.8
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 4.4e-29 133.3 413 32.9
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 7.5e-29 132.5 449 31.8
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-28 131.3 436 31.0
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.7e-28 131.3 436 31.0
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.7e-28 131.3 487 30.0
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 2.2e-28 131.0 459 31.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.7e-28 130.2 414 33.1
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 6.3e-28 129.4 428 32.0
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 8.3e-28 129.0 473 31.7
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.4e-27 128.3 431 31.8
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.4e-27 128.3 459 30.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.8e-27 127.9 462 30.5
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.4e-27 127.5 468 31.6
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.4e-27 127.5 446 32.5
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 3.1e-27 127.1 467 30.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.4e-27 126.3 461 31.2
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 5.4e-27 126.3 445 33.0
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 5.4e-27 126.3 452 32.1
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 7.0e-27 125.9 430 30.5
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.5e-26 123.6 446 30.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-26 123.6 430 32.3
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 4.5e-26 123.2 434 31.8
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 7.8e-26 122.5 428 29.9
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.0e-25 122.1 437 31.6
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.0e-25 122.1 455 31.2
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-25 121.7 439 31.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.3e-25 121.7 447 32.4
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.3e-25 121.7 446 29.1
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 2.3e-25 120.9 418 31.6
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.3e-25 120.9 443 31.4
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 8.6e-25 119.0 420 31.2
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 8.6e-25 119.0 420 31.2
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.1e-24 118.6 521 31.9
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.5e-24 118.2 501 29.9
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.9e-24 117.9 440 33.2
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.3e-24 117.1 435 29.7
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 4.3e-24 116.7 429 30.5
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 7.3e-24 115.9 445 29.7
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 7.3e-24 115.9 418 31.6
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 7.3e-24 115.9 418 31.6
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.3e-24 115.9 445 31.0
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 1.2e-23 115.2 428 32.7
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.2e-23 115.2 424 34.0
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.6e-23 114.8 461 31.7
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.1e-23 114.4 369 32.0
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.0e-22 112.1 425 31.5
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.0e-22 112.1 452 29.9
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.8e-22 111.3 417 32.9
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 8.9e-22 109.0 391 31.5
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.5e-21 108.2 429 29.1
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.0e-21 107.8 431 32.0
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 3.4e-21 107.1 453 30.7
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.4e-21 107.1 469 29.4
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 3.4e-21 107.1 425 31.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 5.7e-21 106.3 427 31.6
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 2.2e-20 104.4 452 31.4
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 2.9e-20 104.0 433 30.9
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.7e-20 103.6 448 29.5
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.4e-19 101.7 456 29.2
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.4e-19 100.9 299 36.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.4e-19 100.9 427 29.5
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.6e-18 98.2 327 32.4
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.6e-18 98.2 472 25.2
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 7.8e-18 95.9 164 45.1
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.0e-17 94.0 272 34.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 5.0e-17 93.2 453 28.5
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.6e-17 92.8 450 28.7
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 6.6e-17 92.8 348 32.8
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 8.6e-17 92.4 348 31.6
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.1e-16 92.0 245 33.5
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 1.5e-16 91.7 84 64.3
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.5e-16 90.9 349 29.8
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 4.3e-16 90.1 500 25.8
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 5.6e-16 89.7 412 27.9
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 9.5e-16 89.0 442 29.9
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 9.5e-16 89.0 458 28.6
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.2e-15 88.6 412 29.9
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.6e-15 88.2 184 39.1
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 2.1e-15 87.8 171 37.4
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.1e-15 87.8 333 30.6
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 3.6e-15 87.0 162 39.5
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 6.2e-15 86.3 411 25.5
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 8.0e-15 85.9 164 38.4
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.1e-14 85.5 428 29.4
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.4e-14 85.1 424 28.3
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 3.1e-14 84.0 413 28.3
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 3.1e-14 84.0 433 29.3
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-14 83.2 165 38.8
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 6.8e-14 82.8 421 26.4
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 6.8e-14 82.8 421 26.4
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 8.9e-14 82.4 161 39.8
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 8.9e-14 82.4 146 44.5
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 8.9e-14 82.4 429 28.4
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-13 82.0 421 26.1
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 1.2e-13 82.0 413 25.7
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-13 81.6 165 37.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-13 80.9 165 37.0
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 3.4e-13 80.5 411 25.1
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 5.8e-13 79.7 160 38.8
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 9.8e-13 79.0 181 34.8
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 9.8e-13 79.0 167 37.7
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.3e-12 78.6 423 29.6
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 4.9e-12 76.6 165 36.4
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 4.9e-12 76.6 61 62.3
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 8.3e-12 75.9 326 26.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.4e-11 75.1 415 25.8
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-11 74.7 151 38.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 2.4e-11 74.3 411 26.0
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.6e-10 71.6 594 23.4
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 2.0e-10 71.2 458 27.5
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 2.0e-10 71.2 168 37.5
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 7.8e-10 69.3 566 24.9
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.0e-09 68.9 417 27.3
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.0e-09 68.9 160 37.5
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 3.0e-09 67.4 155 36.8
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 3.9e-09 67.0 426 27.2
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 8.6e-09 65.9 137 38.7
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.9e-08 64.7 412 27.2
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.9e-08 64.7 418 25.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.8e-07 60.8 421 25.2
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.8e-06 58.2 200 28.0
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 1.8e-06 58.2 53 58.5
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 4.0e-06 57.0 74 48.6


User provided reference genes

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