Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.2e-55 219.5 108 100.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.9e-48 195.7 108 87.0
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 7.1e-48 193.7 108 85.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-47 193.0 108 85.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.2e-47 193.0 108 85.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.2e-47 193.0 108 85.2
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 6.0e-47 190.7 108 85.2
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.8e-41 171.4 110 77.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.8e-41 171.4 116 74.1
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 8.4e-41 170.2 108 75.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.1e-40 169.9 111 76.6
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.9e-40 169.1 110 76.4
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 2.5e-40 168.7 111 75.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.2e-40 168.3 110 77.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.2e-40 167.9 111 73.9
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 4.2e-40 167.9 110 79.1
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 7.1e-40 167.2 109 76.1
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 7.1e-40 167.2 113 77.0
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 9.3e-40 166.8 113 77.0
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.2e-39 166.4 118 70.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.1e-39 165.6 113 75.2
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.1e-39 165.6 112 75.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.7e-39 165.2 112 77.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.5e-39 164.9 111 74.8
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 4.6e-39 164.5 111 73.9
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.0e-39 164.1 115 73.9
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 7.9e-39 163.7 115 74.8
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.0e-38 163.3 110 75.5
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.0e-38 163.3 95 83.2
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.3e-38 162.9 112 74.1
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.3e-38 162.9 96 81.2
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.3e-38 162.9 111 73.9
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-38 162.9 115 73.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.3e-38 162.9 93 84.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.3e-38 162.2 93 83.9
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.3e-38 162.2 111 73.0
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.3e-38 162.2 111 73.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-38 162.2 114 73.7
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 3.0e-38 161.8 112 74.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.9e-38 161.4 115 73.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 3.9e-38 161.4 108 75.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.1e-38 161.0 109 72.5
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.1e-38 161.0 100 79.0
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 8.7e-38 160.2 111 71.2
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.7e-38 160.2 93 80.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.5e-37 159.5 111 73.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.5e-37 159.5 110 70.9
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.5e-37 159.5 114 71.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.9e-37 159.1 116 69.0
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 3.3e-37 158.3 110 71.8
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.3e-37 157.9 103 73.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.3e-37 157.9 144 61.8
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.4e-37 157.1 112 64.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 7.4e-37 157.1 110 72.7
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 9.7e-37 156.8 103 72.8
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 9.7e-37 156.8 109 71.6
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-36 156.4 86 86.0
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-36 156.4 86 86.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.3e-36 156.4 115 70.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.6e-36 156.0 112 72.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.3e-36 154.1 113 70.8
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.1e-35 153.3 103 76.7
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-35 153.3 112 65.2
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-35 153.3 89 78.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.4e-35 152.9 106 74.5
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-35 152.5 111 63.1
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.8e-35 152.5 114 67.5
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.4e-35 152.1 113 62.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.1e-35 151.8 112 66.1
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.1e-35 151.8 106 73.6
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.1e-35 151.8 113 63.7
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.1e-35 151.8 113 63.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.1e-35 151.8 113 63.7
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.1e-35 151.8 113 63.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 4.1e-35 151.4 89 79.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 5.3e-35 151.0 113 63.7
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 5.3e-35 151.0 107 72.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 5.3e-35 151.0 112 63.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 6.9e-35 150.6 112 63.4
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 6.9e-35 150.6 112 63.4
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.9e-35 150.6 109 69.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.9e-35 150.6 141 61.0
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-34 149.4 109 68.8
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.0e-34 149.1 113 62.8
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.0e-34 149.1 109 68.8
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.6e-34 148.7 112 61.6
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-34 148.7 109 68.8
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-34 148.7 109 68.8
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.5e-34 147.9 110 70.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.5e-34 147.9 113 65.5
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.9e-34 147.5 88 78.4
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.0e-33 146.7 112 69.6
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.0e-33 146.7 107 70.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.3e-33 146.4 87 81.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.2e-33 145.6 112 60.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.2e-33 145.6 111 59.5
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.2e-33 145.6 113 65.5
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 3.8e-33 144.8 110 67.3
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 3.8e-33 144.8 87 75.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.8e-33 144.8 113 62.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.0e-33 144.4 88 79.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.5e-33 143.7 87 79.3
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-32 143.3 87 79.3
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.9e-32 142.5 112 58.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.9e-32 142.5 111 64.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.2e-32 141.7 112 58.9
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 3.2e-32 141.7 88 81.8
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 9.3e-32 140.2 154 51.9
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.6e-31 139.4 155 52.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.1e-31 139.0 112 61.6
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.7e-31 138.7 88 80.7
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 4.6e-31 137.9 113 59.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 4.6e-31 137.9 89 73.0
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 6.1e-31 137.5 111 63.1
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.0e-30 136.7 110 64.5
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.3e-30 135.6 87 77.0
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.5e-29 132.9 112 56.2
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.9e-29 132.5 113 61.9
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.8e-28 128.6 116 60.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.8e-28 128.6 90 71.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.8e-27 125.9 82 69.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.8e-27 125.9 82 69.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.5e-26 122.9 91 67.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.0e-26 122.5 115 56.5
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.6e-26 122.1 81 71.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.4e-26 121.7 82 68.3
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 4.5e-26 121.3 95 67.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 7.7e-26 120.6 85 70.6
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.7e-25 119.4 72 77.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.4e-24 116.3 90 65.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.9e-24 115.9 68 83.8
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.5e-24 115.5 78 70.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 5.5e-24 114.4 82 73.2
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.2e-24 114.0 78 70.5
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.1e-23 110.9 112 54.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 3.9e-22 108.2 82 67.1
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-21 106.3 85 67.1
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.0e-21 105.9 86 67.4
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-21 105.9 87 63.2
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.4e-21 104.0 91 57.1
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.7e-21 103.6 80 67.5
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.3e-19 97.8 66 69.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.2e-17 92.4 74 62.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-17 92.0 77 58.4
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-17 92.0 77 58.4
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 2.9e-17 92.0 88 52.3
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 5.0e-17 91.3 92 52.2
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.5e-16 89.0 50 88.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 5.5e-16 87.8 51 84.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.6e-15 86.3 69 58.0
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.1e-15 85.9 85 50.6
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-15 85.9 61 72.1
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.3e-12 76.6 63 60.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 8.2e-12 73.9 55 61.8
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.4e-11 73.2 68 48.5
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.8e-11 72.8 67 55.2
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.4e-11 72.4 46 78.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.0e-10 69.3 79 54.4
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.6e-10 68.9 63 60.3
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 6.5e-09 64.3 72 47.2
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 8.0e-07 57.4 65 43.1
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 8.0e-07 57.4 65 43.1
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.7e-06 54.3 43 60.5


User provided reference genes

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