Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 2.3e-25 119.8 64 100.0
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.1e-22 110.9 63 95.2
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 4.0e-22 109.0 63 93.7
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 6.9e-22 108.2 63 90.5
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 1.2e-21 107.5 62 93.5
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.2e-21 107.5 62 93.5
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.2e-21 107.5 63 92.1
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.5e-21 107.1 63 92.1
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.0e-21 106.7 63 90.5
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 2.0e-21 106.7 63 90.5
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.0e-21 106.7 63 88.9
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 3.4e-21 105.9 62 91.9
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 3.4e-21 105.9 61 93.4
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 3.4e-21 105.9 63 90.5
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 4.4e-21 105.5 61 93.4
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 4.4e-21 105.5 62 91.9
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 4.4e-21 105.5 63 88.9
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 4.4e-21 105.5 63 88.9
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 5.8e-21 105.1 61 93.4
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 7.6e-21 104.8 63 88.9
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 7.6e-21 104.8 61 93.4
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 7.6e-21 104.8 62 88.7
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 9.9e-21 104.4 62 90.3
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 1.3e-20 104.0 61 91.8
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 1.3e-20 104.0 63 88.9
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 1.7e-20 103.6 63 88.9
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 1.7e-20 103.6 63 85.7
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 1.7e-20 103.6 64 87.5
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 2.2e-20 103.2 63 87.3
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 2.9e-20 102.8 63 85.7
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 2.9e-20 102.8 61 90.2
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 3.8e-20 102.4 62 88.7
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 4.9e-20 102.1 61 88.5
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 6.4e-20 101.7 63 87.3
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 6.4e-20 101.7 61 88.5
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 6.4e-20 101.7 61 90.2
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 6.4e-20 101.7 61 90.2
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 8.4e-20 101.3 62 87.1
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 8.4e-20 101.3 63 85.7
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 1.1e-19 100.9 61 88.5
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 1.1e-19 100.9 59 91.5
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 1.4e-19 100.5 63 84.1
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 1.4e-19 100.5 62 87.1
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 1.4e-19 100.5 63 84.1
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 1.4e-19 100.5 63 85.7
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 1.9e-19 100.1 59 89.8
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 1.9e-19 100.1 59 89.8
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 1.9e-19 100.1 59 89.8
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 1.9e-19 100.1 59 89.8
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 1.9e-19 100.1 59 91.5
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 2.4e-19 99.8 59 89.8
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 2.4e-19 99.8 63 81.0
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 2.4e-19 99.8 61 86.9
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 3.2e-19 99.4 62 85.5
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 4.2e-19 99.0 59 88.1
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 4.2e-19 99.0 61 83.6
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 4.2e-19 99.0 61 86.9
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 4.2e-19 99.0 63 81.0
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 4.2e-19 99.0 62 83.9
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 4.2e-19 99.0 62 87.1
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 5.4e-19 98.6 59 89.8
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 9.3e-19 97.8 59 88.1
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 2.7e-18 96.3 63 81.0
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 2.7e-18 96.3 58 86.2
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 2.7e-18 96.3 61 80.3
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 2.7e-18 96.3 61 80.3
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 4.6e-18 95.5 63 81.0
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 4.6e-18 95.5 64 84.4
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 6.0e-18 95.1 61 82.0
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 6.0e-18 95.1 62 79.0
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 1.0e-17 94.4 63 77.8
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 83.1
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 1.7e-17 93.6 63 79.4
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 1.7e-17 93.6 62 80.6
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 2.3e-17 93.2 61 80.3
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 5.1e-17 92.0 59 81.4
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 6.6e-17 91.7 59 79.7
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 8.7e-17 91.3 67 79.1
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 8.7e-17 91.3 59 78.0
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 1.1e-16 90.9 59 84.7
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 3.3e-16 89.4 58 79.3
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 3.3e-16 89.4 52 90.4
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 7.3e-16 88.2 63 74.6
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 1.3e-15 87.4 63 73.0
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 1.8e-14 83.6 83 63.9
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 3.1e-14 82.8 52 82.7
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 4.0e-14 82.4 54 79.6
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 1.2e-13 80.9 51 82.4
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 2.6e-13 79.7 51 80.4
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 7.6e-13 78.2 55 74.5
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 7.6e-13 78.2 50 78.0
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 2.9e-12 76.3 53 81.1
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 5.1e-09 65.5 54 68.5
COL.COLO4_10551 Corchorus olitorius HOM05D007682 ORTHO05D009690 6.2e-07 58.5 33 93.9
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 1.1e-06 57.8 33 87.9
FvH4_2g14440 Fragaria vesca HOM05D007682 ORTHO05D009690 1.8e-06 57.0 36 77.8


User provided reference genes

Program Settings