Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G312300 Theobroma cacao HOM05D000520 ORTHO05D000399 4.5e-160 568.2 347 100.0
Duzib177G0908 Durio zibethinus HOM05D000520 ORTHO05D000399 9.2e-89 331.3 330 62.4
Duzib128G0684 Durio zibethinus HOM05D000520 ORTHO05D000399 2.7e-88 329.7 328 64.9
Gorai.007G299600 Gossypium raimondii HOM05D000520 ORTHO05D000399 5.0e-87 325.5 338 68.6
Gohir.D11G277400 Gossypium hirsutum HOM05D000520 ORTHO05D000399 8.9e-84 314.7 336 65.8
Gohir.A11G267400 Gossypium hirsutum HOM05D000520 ORTHO05D000399 7.8e-80 301.6 336 67.9
Gohir.D08G225800 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.9e-54 217.2 337 53.4
Gorai.004G239800 Gossypium raimondii HOM05D000520 ORTHO05D000399 1.3e-53 214.5 336 53.9
Gohir.A08G208900 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.8e-52 210.7 337 52.5
TWI12G0219 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 3.4e-51 206.5 336 58.3
CANSAT54G1029 Cannabis sativa HOM05D000520 ORTHO05D000399 2.8e-45 186.8 343 50.1
CiPaw.07G020900 Carya illinoinensis HOM05D000520 ORTHO05D000399 3.2e-41 173.3 350 48.0
Cpa.g.sc48.88 Carica papaya HOM05D000520 ORTHO05D000399 5.7e-38 162.5 348 45.1
Manes.09G169700 Manihot esculenta HOM05D000520 ORTHO05D000399 1.3e-37 161.4 327 47.4
COL.COLO4_10512 Corchorus olitorius HOM05D000520 ORTHO05D000399 2.1e-37 160.6 244 43.9
QL03p021323 Quercus lobata HOM05D000520 ORTHO05D000399 4.1e-36 156.4 345 47.8
QL03p021357 Quercus lobata HOM05D000520 ORTHO05D000399 4.1e-36 156.4 345 47.8
Potri.013G017700 Populus trichocarpa HOM05D000520 ORTHO05D000399 3.2e-33 146.7 362 45.3
Manes.08G118400 Manihot esculenta HOM05D000520 ORTHO05D000399 4.2e-33 146.4 327 54.4
Ciclev10001480m.g Citrus clementina HOM05D000520 ORTHO05D000399 4.6e-32 142.9 338 49.4
Sabra13G0016700 Salix brachista HOM05D000520 ORTHO05D000399 6.1e-32 142.5 346 51.4
CiPaw.08G162500 Carya illinoinensis HOM05D000520 ORTHO05D000399 1.8e-31 141.0 342 40.4
Sabra13G0020700 Salix brachista HOM05D000520 ORTHO05D000399 1.5e-30 137.9 343 48.4
Sabra05G0031500 Salix brachista HOM05D000520 ORTHO05D000399 7.4e-30 135.6 332 48.8
Nitab4.5_0006988g0010 Nicotiana tabacum HOM05D000520 ORTHO05D000399 4.5e-27 126.3 350 36.9
Ca_10127_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 1.6e-24 117.9 353 41.6
Phvul.007G196900 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 3.6e-24 116.7 360 43.3
Phvul.006G090100 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.8e-23 114.4 352 40.6
Atru.chr2.24 Acer truncatum HOM05D000520 ORTHO05D000399 2.3e-23 114.0 346 43.6
Lj5g0012045 Lotus japonicus HOM05D000520 ORTHO05D000399 2.3e-23 114.0 369 40.9
Nn4g25875 Nelumbo nucifera HOM05D000520 ORTHO05D000399 1.5e-22 111.3 349 40.4
TAR636G3055 Trochodendron aralioides HOM05D000520 ORTHO05D000399 1.5e-22 111.3 329 38.6
Lj9A142G3 Lonicera japonica HOM05D000520 ORTHO05D000399 3.3e-22 110.2 347 35.4
VMungo0540G1224 Vigna mungo HOM05D000520 ORTHO05D000399 7.4e-22 109.0 357 42.0
CSS0034702 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 3.7e-21 106.7 337 42.1
Potri.005G026100 Populus trichocarpa HOM05D000520 ORTHO05D000399 3.7e-21 106.7 328 39.9
Dinv30800 Davidia involucrata HOM05D000520 ORTHO05D000399 6.3e-21 105.9 339 42.2
CSS0032030 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 8.2e-21 105.5 362 37.8
Hma1.2p1_1292F.1_g273650 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.1e-20 105.1 332 46.4
Hma1.2p1_1374F.1_g278785 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.1e-20 105.1 332 46.4
PGSC0003DMG400024753 Solanum tuberosum HOM05D000520 ORTHO05D000399 1.8e-20 104.4 351 31.9
ClCG02G015460 Citrullus lanatus HOM05D000520 ORTHO05D000399 3.1e-20 103.6 339 40.1
Sc16g0008600 Simmondsia chinensis HOM05D000520 ORTHO05D000399 5.3e-20 102.8 354 39.8
CsaV3_2G006610 Cucumis sativus L. HOM05D000520 ORTHO05D000399 9.1e-20 102.1 338 39.3
Prupe.6G321400 Prunus persica HOM05D000520 ORTHO05D000399 3.4e-19 100.1 417 36.9
Haze_04146 Corylus avellana HOM05D000520 ORTHO05D000399 4.5e-19 99.8 345 48.1
Eucgr.H04515 Eucalyptus grandis HOM05D000520 ORTHO05D000399 5.9e-19 99.4 351 40.2
MELO3C004225.2 Cucumis melo HOM05D000520 ORTHO05D000399 1.0e-18 98.6 334 39.8
Glyma.10G152100 Glycine max HOM05D000520 ORTHO05D000399 1.7e-18 97.8 359 34.8
Dinv40323 Davidia involucrata HOM05D000520 ORTHO05D000399 2.2e-18 97.4 331 44.4
Dinv29767 Davidia involucrata HOM05D000520 ORTHO05D000399 1.4e-17 94.7 333 35.7
THA.LOC104820796 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 4.2e-17 93.2 340 40.6
VMungo0720G1715 Vigna mungo HOM05D000520 ORTHO05D000399 4.2e-17 93.2 362 40.9
Rhsim04G0221200 Rhododendron simsii HOM05D000520 ORTHO05D000399 2.1e-16 90.9 338 34.9
Haze_01213 Corylus avellana HOM05D000520 ORTHO05D000399 4.7e-16 89.7 331 36.6
Oeu030336.1 Olea europaea HOM05D000520 ORTHO05D000399 7.9e-16 89.0 363 36.9
EL10Ac4g09925 Beta vulgaris HOM05D000520 ORTHO05D000399 1.0e-15 88.6 92 60.9
Actinidia21490 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.3e-15 87.4 353 35.7
Nitab4.5_0010962g0010 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.0e-15 87.0 356 30.9
Actinidia19782 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.9e-15 86.7 325 34.8
Aqoxy5G00713 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 3.9e-15 86.7 354 33.3
Sopen01g043130 Solanum pennellii HOM05D000520 ORTHO05D000399 3.9e-15 86.7 359 31.8
vmacro19619 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 6.7e-15 85.9 361 35.5
Lalb_Chr21g0310601 Lupinus albus HOM05D000520 ORTHO05D000399 2.0e-14 84.3 335 37.3
MD04G1201300 Malus domestica HOM05D000520 ORTHO05D000399 2.0e-14 84.3 400 42.2
Rhsim05G0141100 Rhododendron simsii HOM05D000520 ORTHO05D000399 2.0e-14 84.3 364 39.3
Psat6g150440 Pisum sativum HOM05D000520 ORTHO05D000399 2.6e-14 84.0 224 39.7
PGR083G0269 Punica granatum HOM05D000520 ORTHO05D000399 2.6e-14 84.0 348 38.5
CAN.G665.11 Capsicum annuum HOM05D000520 ORTHO05D000399 3.3e-14 83.6 342 36.8
AUR62005195 Chenopodium quinoa HOM05D000520 ORTHO05D000399 4.4e-14 83.2 99 55.6
PGR031G0260 Punica granatum HOM05D000520 ORTHO05D000399 4.4e-14 83.2 338 35.8
Aa31LG2G11670 Aethionema arabicum HOM05D000520 ORTHO05D000399 5.7e-14 82.8 336 37.2
Ca_05804_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 7.4e-14 82.4 349 31.5
Cfa006623 Carpinus fangiana HOM05D000520 ORTHO05D000399 2.8e-13 80.5 341 44.0
Glyma.03G236200 Glycine max HOM05D000520 ORTHO05D000399 3.7e-13 80.1 346 38.4
Hund21707 Selenicereus undatus HOM05D000520 ORTHO05D000399 3.7e-13 80.1 104 51.9
Ah.04g161080 Amaranthus hybridus HOM05D000520 ORTHO05D000399 4.8e-13 79.7 341 41.9
AUR62000774 Chenopodium quinoa HOM05D000520 ORTHO05D000399 1.1e-12 78.6 93 54.8
BcaB07g31116 Brassica carinata HOM05D000520 ORTHO05D000399 1.4e-12 78.2 98 56.1
Peaxi162Scf00037g01024 Petunia axillaris HOM05D000520 ORTHO05D000399 1.4e-12 78.2 342 31.3
MSTRG.20422 Avicennia marina HOM05D000520 ORTHO05D000399 1.8e-12 77.8 338 35.2
Solyc01g099600.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 2.4e-12 77.4 355 28.5
BcaC04g22039 Brassica carinata HOM05D000520 ORTHO05D000399 4.1e-12 76.6 349 34.1
QL06p008798 Quercus lobata HOM05D000520 ORTHO05D000399 4.1e-12 76.6 329 32.8
THA.LOC104805888 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 4.1e-12 76.6 351 35.3
MD12G1213700 Malus domestica HOM05D000520 ORTHO05D000399 5.3e-12 76.3 390 40.8
A09p19190 Brassica napus HOM05D000520 ORTHO05D000399 7.0e-12 75.9 359 33.7
C09p24200 Brassica napus HOM05D000520 ORTHO05D000399 1.5e-11 74.7 349 33.8
BolC9t55337H Brassica oleracea HOM05D000520 ORTHO05D000399 1.5e-11 74.7 349 33.8
CARHR289750 Cardamine hirsuta HOM05D000520 ORTHO05D000399 1.5e-11 74.7 342 34.2
BraA09t37537Z Brassica rapa HOM05D000520 ORTHO05D000399 2.0e-11 74.3 353 32.0
TAR365G1095 Trochodendron aralioides HOM05D006719 ORTHO05D007063 2.0e-11 74.3 329 28.6
Cc03_g02010 Coffea canephora HOM05D000520 ORTHO05D000399 3.5e-11 73.6 332 38.0
Thhalv10004455m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 4.5e-11 73.2 123 46.3
Thhalv10023508m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 7.7e-11 72.4 97 51.5
Sed0005450 Sechium edule HOM05D000520 ORTHO05D000399 7.7e-11 72.4 332 35.5
Sc09g0002980 Simmondsia chinensis HOM05D000520 ORTHO05D000399 7.7e-11 72.4 333 37.2
Hma1.2p1_2670F.1_g326640 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.0e-10 72.0 330 33.0
DCAR_024565 Daucus carota HOM05D000520 ORTHO05D000399 1.7e-10 71.2 337 38.6
Manes.03G194600 Manihot esculenta HOM05D000520 ORTHO05D000399 1.7e-10 71.2 333 28.8
Medtr7g113110 Medicago truncatula HOM05D000520 ORTHO05D000399 2.2e-10 70.9 345 33.3
MELO3C015311.2 Cucumis melo HOM05D000520 ORTHO05D044562 3.8e-10 70.1 367 29.7
PSO210G6472 Papaver somniferum HOM05D000520 ORTHO05D000399 3.8e-10 70.1 339 28.6
AL1G65730 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 5.0e-10 69.7 338 33.4
ClCG03G017100 Citrullus lanatus HOM05D000520 ORTHO05D044562 6.5e-10 69.3 367 31.9
Sp2g06720 Schrenkiella parvula HOM05D000520 ORTHO05D000399 6.5e-10 69.3 94 52.1
CiPaw.01G149000 Carya illinoinensis HOM05D000520 ORTHO05D000399 1.5e-09 68.2 336 30.1
SalBow7G2560 Salvia bowleyana HOM05D000520 ORTHO05D000399 3.2e-09 67.0 72 56.9
Lalb_Chr02g0148151 Lupinus albus HOM05D000520 ORTHO05D000399 4.2e-09 66.6 266 39.5
Medtr1g083310 Medicago truncatula HOM05D000520 ORTHO05D000399 9.4e-09 65.5 381 35.2
HPP92_026816 Vanilla planifolia HOM05D000520 ORTHO05D000399 9.4e-09 65.5 343 27.7
GSVIVG01027966001 Vitis vinifera HOM05D000520 ORTHO05D000399 9.4e-09 65.5 129 38.8
Lalb_Chr07g0177721 Lupinus albus HOM05D000520 ORTHO05D000399 2.1e-08 64.3 332 28.3
Lalb_Chr13g0303641 Lupinus albus HOM05D000520 ORTHO05D000399 2.7e-08 63.9 336 29.2
Nn3g21431 Nelumbo nucifera HOM05D000520 ORTHO05D000399 2.7e-08 63.9 58 60.3
Psat3g011160 Pisum sativum HOM05D000520 ORTHO05D000399 2.7e-08 63.9 361 32.4
TPR.G6031 Trifolium pratense HOM05D000520 ORTHO05D000399 3.6e-08 63.5 366 35.0
arahy.Tifrunner.gnm1.ann1.6766IL Arachis hypogaea HOM05D000520 ORTHO05D000399 4.7e-08 63.2 335 33.7
Gorai.004G088800 Gossypium raimondii HOM05D000520 ORTHO05D000399 8.0e-08 62.4 329 32.2
GSVIVG01031153001 Vitis vinifera HOM05D000520 ORTHO05D000399 8.0e-08 62.4 89 61.8
Carub.0002s0803 Capsella rubella HOM05D000520 ORTHO05D000399 1.0e-07 62.0 334 32.9
Migut.G00167 Erythranthe guttata HOM05D000520 ORTHO05D000399 1.4e-07 61.6 331 34.1
arahy.Tifrunner.gnm1.ann1.H24US0 Arachis hypogaea HOM05D000520 ORTHO05D000399 1.8e-07 61.2 351 30.8
Cc02_g33120 Coffea canephora HOM05D000520 ORTHO05D000399 1.8e-07 61.2 336 36.0
CDE11G0338 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 2.3e-07 60.8 339 31.0
PSO832G3103 Papaver somniferum HOM05D000520 ORTHO05D000399 2.3e-07 60.8 342 27.8
CSS0021736 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 4.0e-07 60.1 55 60.0
vmacro22973 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 4.0e-07 60.1 55 58.2
THA.LOC104821721 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 5.2e-07 59.7 331 36.6
arahy.Tifrunner.gnm1.ann1.RGBH4Y Arachis hypogaea HOM05D000520 ORTHO05D000399 6.7e-07 59.3 345 31.9
TWI59G1036 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.1e-06 58.5 55 58.2
Atru.chr5.1202 Acer truncatum HOM05D000520 ORTHO05D000399 2.0e-06 57.8 337 33.5
Actinidia24329 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.0e-06 57.8 55 60.0
Migut.G00271 Erythranthe guttata HOM05D000520 ORTHO05D000399 2.0e-06 57.8 337 32.6
MBI18_g04688_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 2.0e-06 57.8 332 35.2
Potri.010G024700 Populus trichocarpa HOM05D000520 ORTHO05D000399 2.0e-06 57.8 329 30.7
TWI14G0439 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.0e-06 57.8 56 60.7
arahy.Tifrunner.gnm1.ann1.8E5SLS Arachis hypogaea HOM05D000520 ORTHO05D000399 2.6e-06 57.4 358 35.8
CDE05G0773 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 2.6e-06 57.4 121 39.7
QL12p026987 Quercus lobata HOM05D000520 ORTHO05D000399 2.6e-06 57.4 58 55.2
Sabra10G0014300 Salix brachista HOM05D000520 ORTHO05D000399 3.3e-06 57.0 329 28.0
MSTRG.3922 Avicennia marina HOM05D000520 ORTHO05D000399 4.4e-06 56.6 335 33.7
BolC2t11889H Brassica oleracea HOM05D000520 ORTHO05D000399 4.4e-06 56.6 113 38.9
Peaxi162Scf00205g00218 Petunia axillaris HOM05D000520 ORTHO05D006660 4.4e-06 56.6 51 54.9
Sabra10G0084300 Salix brachista HOM05D000520 ORTHO05D006660 5.7e-06 56.2 49 57.1
GSVIVG01017753001 Vitis vinifera HOM05D000520 ORTHO05D000399 7.5e-06 55.8 334 30.8
BcaC03g17796 Brassica carinata HOM05D000520 ORTHO05D000399 9.7e-06 55.5 113 38.9
Rhsim01G0283400 Rhododendron simsii HOM05D000520 ORTHO05D000399 9.7e-06 55.5 48 56.2
SalBow2G0691 Salvia bowleyana HOM05D000520 ORTHO05D000399 9.7e-06 55.5 331 35.6
TAR633G1595 Trochodendron aralioides HOM05D000520 ORTHO05D000399 9.7e-06 55.5 56 58.9
vmacro08145 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 9.7e-06 55.5 337 30.6


User provided reference genes

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