Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 6.6e-235 817.0 414 100.0
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 4.2e-173 611.7 417 75.3
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 3.3e-154 548.9 411 71.3
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 6.3e-153 544.7 415 70.6
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 4.1e-144 515.4 414 64.7
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 3.9e-126 455.7 403 60.0
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 1.5e-125 453.8 413 57.6
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 3.3e-125 452.6 405 59.8
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 4.3e-125 452.2 418 58.6
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 1.2e-124 450.7 426 56.8
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 8.0e-124 448.0 412 59.0
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 4.0e-123 445.7 430 56.0
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 4.0e-123 445.7 430 57.4
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.6e-122 443.0 395 59.7
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 3.4e-122 442.6 415 57.6
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 9.8e-122 441.0 395 59.2
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.9e-121 439.5 420 56.9
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 4.9e-121 438.7 472 51.9
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 3.2e-120 436.0 410 57.6
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 6.0e-119 431.8 408 56.9
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 1.7e-118 430.3 405 57.0
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 1.1e-117 427.6 408 56.9
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 1.6e-116 423.7 403 56.3
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 2.1e-116 423.3 408 55.9
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 4.7e-116 422.2 403 55.8
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 4.4e-114 415.6 408 55.4
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 7.5e-114 414.8 320 71.2
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 9.8e-114 414.5 413 54.5
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 5.4e-112 408.7 412 54.6
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 7.8e-111 404.8 426 53.3
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 3.0e-110 402.9 411 55.0
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 6.6e-110 401.7 414 53.9
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.6e-110 401.7 411 54.3
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 1.9e-109 400.2 416 53.8
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 2.5e-109 399.8 405 53.1
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 7.3e-109 398.3 350 59.4
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 4.7e-108 395.6 416 53.4
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.8e-107 393.7 414 52.9
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 1.8e-107 393.7 412 53.9
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 3.1e-107 392.9 420 50.0
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 4.0e-107 392.5 402 54.0
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 5.2e-107 392.1 422 52.6
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 1.5e-106 390.6 576 43.8
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 2.0e-106 390.2 412 51.0
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 2.6e-106 389.8 410 52.7
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 7.6e-106 388.3 403 54.1
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 7.6e-106 388.3 404 53.2
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 7.6e-106 388.3 412 53.4
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 3.8e-105 386.0 410 51.5
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 4.9e-105 385.6 358 58.4
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 8.4e-105 384.8 403 52.6
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 8.4e-105 384.8 402 53.2
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 5.4e-104 382.1 401 53.6
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 9.2e-104 381.3 416 52.2
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.6e-103 380.6 416 50.7
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 1.6e-103 380.6 404 51.7
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 2.1e-103 380.2 403 52.4
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 6.0e-103 378.6 415 52.0
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 1.3e-102 377.5 415 50.6
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 3.9e-102 375.9 378 54.2
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 6.6e-102 375.2 398 50.8
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.1e-101 374.4 411 51.1
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 1.9e-101 373.6 419 48.9
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 4.3e-101 372.5 419 51.3
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 5.6e-101 372.1 423 51.8
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.6e-100 370.5 388 54.1
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 4.7e-100 369.0 408 52.0
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 6.2e-100 368.6 394 52.5
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 6.2e-100 368.6 394 52.5
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 8.1e-100 368.2 369 55.8
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 1.4e-99 367.5 411 51.8
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.3e-97 360.9 405 50.1
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 2.9e-97 359.8 395 52.4
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 2.9e-97 359.8 395 52.4
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 3.5e-95 352.8 429 48.3
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 3.0e-94 349.7 284 64.8
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 2.4e-91 340.1 320 58.4
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.3e-89 334.3 413 48.4
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 3.8e-89 332.8 402 49.8
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 8.4e-89 331.6 347 51.6
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 5.4e-88 328.9 506 42.3
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 1.0e-86 324.7 412 48.3
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 4.3e-85 319.3 434 47.9
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 1.6e-84 317.4 395 46.1
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 1.1e-80 304.7 410 44.4
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 1.4e-80 304.3 387 48.3
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 6.7e-78 295.4 393 45.0
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 5.8e-74 282.3 412 42.2
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 5.8e-74 282.3 400 42.2
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.0e-73 281.6 409 44.3
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 1.3e-73 281.2 398 42.0
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 6.1e-63 245.7 283 53.0
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 5.1e-62 242.7 424 39.9
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 2.3e-54 217.2 241 51.5
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.7e-52 211.1 413 34.9
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 4.1e-51 206.5 419 34.6
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 6.9e-51 205.7 404 34.4
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 7.9e-47 192.2 397 33.2
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 7.7e-34 149.1 194 46.4
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 2.5e-32 144.1 169 50.9
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 1.2e-31 141.7 176 45.5
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 2.0e-29 134.4 353 29.2
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 1.2e-23 115.2 150 45.3
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 3.6e-23 113.6 175 42.3
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.7e-21 106.3 87 62.1
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 7.8e-18 95.9 227 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 7.3e-16 89.4 190 33.2
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 9.5e-16 89.0 101 46.5
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 8.9e-14 82.4 178 33.1
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 7.5e-13 79.3 161 32.3
Os05g0143200 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 3.9e-09 67.0 86 44.2
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 1.1e-08 65.5 145 30.3
BcaB03g15706 Brassica carinata HOM05D001602 ORTHO05D001470 2.5e-08 64.3 183 31.1
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 3.3e-08 63.9 183 30.6
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 3.3e-08 63.9 183 30.6
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 5.6e-08 63.2 183 30.6
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 5.6e-08 63.2 182 30.8
AT1G73320 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 7.3e-08 62.8 183 30.1
A07p29850 Brassica napus HOM05D001602 ORTHO05D001470 7.3e-08 62.8 183 30.6
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 7.3e-08 62.8 183 29.5
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 9.5e-08 62.4 154 31.2
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 1.2e-07 62.0 146 33.6
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 1.6e-07 61.6 183 30.1
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 1.6e-07 61.6 183 30.1
Sc10g0008650 Simmondsia chinensis HOM05D001602 ORTHO05D001470 2.1e-07 61.2 183 31.1
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 3.6e-07 60.5 140 28.6
Eucgr.K02332 Eucalyptus grandis HOM05D001602 ORTHO05D001470 4.7e-07 60.1 171 29.8
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 4.7e-07 60.1 147 29.9
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 6.2e-07 59.7 183 29.0
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 8.0e-07 59.3 173 31.8
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 1.1e-06 58.9 143 27.3
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 1.4e-06 58.5 145 28.3
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 1.4e-06 58.5 183 29.5
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 1.4e-06 58.5 185 23.8
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 1.4e-06 58.5 145 26.9
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 2.3e-06 57.8 142 30.3
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 3.1e-06 57.4 142 29.6
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 3.1e-06 57.4 142 29.6
Ca_25281_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 3.1e-06 57.4 202 30.2
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 3.1e-06 57.4 143 28.7
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 4.0e-06 57.0 151 27.8
Atru.chr2.263 Acer truncatum HOM05D001602 ORTHO05D001470 5.2e-06 56.6 159 30.8
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 5.2e-06 56.6 137 31.4
Glyma.16G128200 Glycine max HOM05D001602 ORTHO05D001470 5.2e-06 56.6 161 29.2
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 5.2e-06 56.6 147 28.6
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 5.2e-06 56.6 135 31.9
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 6.8e-06 56.2 180 30.0
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 6.8e-06 56.2 155 27.7
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 6.8e-06 56.2 159 28.3
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 6.8e-06 56.2 159 30.2
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 8.9e-06 55.8 151 27.2
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 8.9e-06 55.8 142 29.6
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 8.9e-06 55.8 142 29.6
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 8.9e-06 55.8 168 27.4
HanXRQChr03g0089261 Helianthus annuus HOM05D001602 ORTHO05D001470 8.9e-06 55.8 165 29.7
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 8.9e-06 55.8 149 28.9


User provided reference genes

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