Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 2.1e-248 862.1 491 100.0
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 6.0e-219 764.2 491 86.4
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.5e-206 723.0 498 77.3
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 7.6e-206 720.7 498 80.3
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 3.4e-198 695.3 496 79.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 2.8e-184 649.0 404 86.6
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 3.1e-159 565.8 492 61.8
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 7.7e-158 561.2 350 82.9
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 3.2e-156 555.8 493 67.1
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.2e-153 547.4 504 61.5
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.8e-152 542.7 493 59.0
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 8.6e-149 531.2 495 58.8
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.5e-148 530.4 432 66.7
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.9e-148 530.0 429 64.6
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.2e-148 528.9 453 62.7
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 4.2e-148 528.9 429 63.2
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.1e-147 526.6 495 58.6
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.3e-146 523.1 391 64.5
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 4.0e-146 522.3 490 61.6
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.5e-145 520.4 493 58.4
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 2.0e-145 520.0 488 59.4
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.6e-145 519.6 391 64.2
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.5e-145 518.1 429 61.1
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.7e-144 516.9 428 61.4
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.7e-144 515.8 392 64.3
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 4.9e-144 515.4 492 58.7
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 3.2e-143 512.7 429 62.7
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.5e-142 509.2 430 62.3
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 5.9e-142 508.4 390 64.9
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 8.6e-141 504.6 495 57.6
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.5e-140 503.1 495 57.6
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 5.6e-140 501.9 428 61.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.6e-139 500.4 488 58.2
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.8e-139 499.6 420 64.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 2.8e-139 499.6 418 64.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 2.8e-139 499.6 428 61.2
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.0e-138 497.7 426 61.5
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.4e-138 497.3 494 55.3
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.8e-138 496.9 426 62.4
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.5e-137 493.8 493 59.0
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 4.4e-137 492.3 437 57.4
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.8e-137 491.9 426 61.5
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.3e-136 490.7 435 57.7
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.3e-136 490.7 435 57.7
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 2.9e-136 489.6 494 55.9
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 8.3e-136 488.0 389 61.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.4e-135 487.3 380 62.1
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 4.1e-135 485.7 434 57.4
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 5.4e-135 485.3 392 61.2
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 7.0e-135 485.0 498 54.4
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.6e-134 483.8 498 56.0
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.5e-134 482.6 491 54.2
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 4.3e-132 475.7 497 51.7
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 5.6e-132 475.3 489 54.2
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 7.3e-132 474.9 423 59.6
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 7.3e-132 474.9 388 61.1
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.2e-131 474.2 430 56.3
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.2e-131 474.2 430 58.8
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 6.2e-131 471.9 497 51.3
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 6.2e-131 471.9 497 51.3
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 6.2e-131 471.9 498 52.0
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.1e-130 471.1 497 51.7
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 3.1e-130 469.5 497 51.7
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 8.9e-130 468.0 430 55.1
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 9.8e-129 464.5 430 56.3
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.2e-128 463.4 432 60.0
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 2.2e-128 463.4 429 57.1
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 4.1e-127 459.1 391 58.1
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 4.1e-127 459.1 391 57.5
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 7.1e-127 458.4 452 52.0
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.1e-126 456.8 429 55.0
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 6.6e-125 451.8 433 55.0
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.9e-124 450.3 357 65.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 7.3e-124 448.4 438 55.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.2e-123 447.6 456 54.2
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 1.6e-123 447.2 430 53.7
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.4e-119 433.3 406 54.7
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 9.2e-119 431.4 431 55.0
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 4.6e-118 429.1 456 51.3
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.0e-118 428.7 343 60.3
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 5.6e-116 422.2 345 59.4
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.2e-114 415.6 348 58.3
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.2e-114 415.6 348 58.3
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.5e-113 414.1 399 51.9
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 3.8e-112 409.5 477 46.3
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.9e-111 407.1 394 52.0
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.9e-108 397.1 406 55.9
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 2.8e-107 393.3 406 52.7
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 4.0e-106 389.4 344 57.8
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 9.0e-106 388.3 344 58.4
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 1.4e-103 380.9 329 56.8
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 3.1e-98 363.2 389 46.8
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 6.0e-94 349.0 307 55.4
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.7e-86 323.6 263 58.2
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 3.5e-78 296.6 321 54.2
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 9.1e-66 255.4 370 38.9
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.7e-64 251.1 365 38.9
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 2.2e-64 250.8 182 65.4
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 4.7e-62 243.0 388 35.3
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.0e-61 241.9 361 37.7
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 4.0e-53 213.4 301 40.9
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 5.2e-53 213.0 197 58.4
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.7e-48 198.0 294 41.5
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.0e-45 188.7 492 33.5
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.4e-44 183.3 379 32.2
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.3e-35 155.2 204 42.6
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 7.3e-31 139.4 178 43.8
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 9.5e-31 139.0 193 45.1
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.7e-30 136.7 197 40.6
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.2e-14 83.2 85 70.6
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 7.5e-12 76.3 89 70.8
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 2.9e-11 74.3 83 68.7
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 6.4e-11 73.2 79 49.4
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.9e-10 71.6 88 58.0
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.1e-10 70.5 88 56.8
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 9.2e-10 69.3 55 58.2
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.6e-09 68.6 86 67.4
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.0e-08 64.3 63 46.0
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 4.3e-07 60.5 73 43.8


User provided reference genes

Program Settings