Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2553.5 1288 100.0
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2452.2 1288 95.7
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2448.3 1288 95.6
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2447.9 1288 95.5
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2419.0 1288 94.6
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2334.3 1288 91.6
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2327.4 1288 90.5
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2325.4 1286 90.0
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2320.0 1286 89.7
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2314.3 1286 89.6
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2312.7 1300 88.5
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2312.3 1286 89.7
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2311.6 1283 89.5
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2309.3 1286 88.7
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2306.9 1283 89.3
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2297.7 1286 89.0
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2297.3 1288 89.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2294.2 1285 88.7
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2291.2 1298 88.1
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2290.4 1286 88.1
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2279.2 1291 88.2
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2275.0 1284 87.9
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2274.2 1286 88.1
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2274.2 1284 87.5
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2265.0 1286 88.0
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2263.0 1296 88.0
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2253.8 1302 87.0
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2252.2 1287 87.9
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2251.9 1287 88.1
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2249.6 1302 86.8
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2244.9 1289 87.4
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2242.6 1287 87.3
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2236.1 1324 85.6
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2234.5 1293 87.1
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2232.6 1285 86.5
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2232.2 1285 86.3
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2229.5 1285 86.2
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2227.2 1285 86.1
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2224.5 1287 85.9
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2223.7 1289 86.0
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2223.4 1284 85.7
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2221.4 1291 86.3
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2220.3 1287 86.8
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2217.6 1286 86.1
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2216.0 1294 85.4
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2208.7 1287 85.5
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2207.9 1286 86.0
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2204.9 1287 84.3
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2202.6 1294 84.9
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2202.2 1297 84.9
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2202.2 1299 84.4
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2192.2 1287 83.9
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2189.8 1286 84.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2189.1 1287 85.6
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2184.5 1292 85.8
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2182.9 1287 83.8
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2181.8 1286 84.3
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2181.4 1287 83.9
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2181.4 1289 84.9
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2176.7 1310 84.7
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2176.0 1288 84.8
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2171.7 1306 84.6
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2171.4 1286 83.7
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2170.2 1286 83.9
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2168.3 1287 84.2
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2161.3 1298 83.6
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2156.3 1295 83.7
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2126.7 1298 82.5
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2121.7 1286 81.8
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2080.4 1414 76.1
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2058.1 1213 83.3
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2042.3 1547 70.4
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 2001.9 1174 84.0
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1990.7 1222 80.5
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1987.6 1288 79.3
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1962.6 1291 76.0
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1921.0 1291 74.2
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1808.9 1314 72.1
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1711.8 960 89.8
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1694.5 938 88.1
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1671.0 954 88.4
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1634.8 1068 78.7
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1611.3 907 86.0
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1582.8 937 82.7
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1577.0 914 85.7
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1563.1 1209 66.3
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1562.0 1292 61.2
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1542.7 909 83.2
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1538.1 911 83.0
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1534.2 1291 60.0
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1519.2 1327 57.8
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1510.4 1181 66.2
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1507.3 848 87.1
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1500.0 1289 58.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1492.2 911 80.5
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1435.2 954 75.3
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1357.4 1307 53.6
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1323.5 916 70.2
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1156.0 687 84.3
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 2.1e-263 913.3 803 61.3
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 3.8e-257 892.5 827 58.2
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.1e-243 847.8 476 89.1
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 2.3e-217 760.4 498 79.1
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 5.8e-213 745.7 450 84.9
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.1e-206 724.9 552 67.9
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 3.8e-180 636.7 347 94.5
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.7e-178 630.6 420 74.3
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.8e-177 627.9 354 91.5
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.2e-170 605.1 352 88.9
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 4.6e-170 603.2 346 90.2
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 3.1e-166 590.5 452 65.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 3.4e-165 587.0 347 87.0
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 1.8e-161 574.7 347 86.2
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 2.0e-160 571.2 335 82.4
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 4.5e-157 560.1 347 84.4
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.5e-155 555.1 376 73.4
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 4.8e-151 540.0 637 45.1
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 8.2e-151 539.3 302 86.1
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.4e-145 521.9 394 73.1
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 5.0e-140 503.4 275 93.1
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 6.6e-132 476.5 259 92.7
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 4.7e-130 470.3 410 61.2
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 9.2e-126 456.1 302 73.8
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 4.0e-121 440.7 275 85.1
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 8.3e-119 433.0 243 87.7
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.6e-114 417.5 347 65.7
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.8e-103 380.9 260 78.1
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.1e-102 379.4 266 78.2
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 9.0e-89 333.2 264 62.9
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.7e-76 290.4 166 83.1
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 4.5e-72 277.7 153 94.8
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 2.2e-71 275.4 466 35.4
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.2e-63 248.8 426 39.0
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 4.2e-62 244.6 134 91.8
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 8.8e-60 236.9 133 85.0
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 6.9e-57 227.3 142 76.1
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 5.9e-56 224.2 127 85.0
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 4.2e-54 218.0 129 87.6
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 9.4e-54 216.9 119 86.6
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 5.7e-43 181.0 127 68.5
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 9.7e-43 180.3 100 88.0
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.3e-42 177.6 100 87.0
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 2.6e-40 172.2 164 56.1
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 1.3e-39 169.9 123 72.4
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.8e-36 159.5 113 66.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.3e-35 155.2 128 67.2
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.7e-34 152.9 123 66.7
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.5e-31 141.0 97 63.9
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.5e-30 139.0 75 85.3
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 5.5e-30 137.9 75 85.3
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.2e-27 130.2 73 79.5
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.4e-27 128.6 133 51.1
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 2.7e-24 119.0 73 78.1
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 3.5e-24 118.6 130 53.8
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.7e-16 92.4 58 77.6
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.3e-15 90.1 99 54.5
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 3.7e-10 72.0 76 55.3
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.2e-08 67.0 142 35.2
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.8e-08 64.3 34 82.4
Gorai.007G272800 Gossypium raimondii HOM05D002281 ORTHO05D046983 7.3e-06 57.8 30 86.7
Gohir.A01G123033 Gossypium hirsutum HOM05D000009 ORTHO05D006818 9.5e-06 57.4 32 87.5


User provided reference genes

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