Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G251000 Theobroma cacao HOM05D008218 ORTHO05D010347 4.5e-18 93.6 48 100.0
Phvul.008G131550 Phaseolus vulgaris HOM05D008218 ORTHO05D010347 8.1e-12 72.8 48 79.2
Prupe.8G198600 Prunus persica HOM05D008218 ORTHO05D010347 1.1e-11 72.4 48 79.2
RcHm_v2.0_Chr6g0284071 Rosa chinensis HOM05D008218 ORTHO05D010347 1.1e-11 72.4 48 79.2
Hma1.2p1_0149F.1_g066410 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 1.4e-11 72.0 48 79.2
TWI36G0894 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 1.4e-11 72.0 48 77.1
PGSC0003DMG400007753 Solanum tuberosum HOM05D008218 ORTHO05D010347 1.2e-10 68.9 44 79.5
FAN27G2427 Fragaria x ananassa HOM05D008218 ORTHO05D010347 2.6e-10 67.8 42 81.0
FAN15G3347 Fragaria x ananassa HOM05D008218 ORTHO05D010347 3.4e-10 67.4 42 81.0
COL.COLO4_08652 Corchorus olitorius HOM05D008218 ORTHO05D010347 7.6e-10 66.2 48 75.0
Gohir.A07G161100 Gossypium hirsutum HOM05D008218 ORTHO05D010347 7.6e-10 66.2 48 75.0
Gohir.D07G164600 Gossypium hirsutum HOM05D008218 ORTHO05D010347 7.6e-10 66.2 48 75.0
Potri.002G246300 Populus trichocarpa HOM05D008218 ORTHO05D010347 7.6e-10 66.2 48 75.0
Lsat_1_v5_gn_2_120021 Lactuca sativa HOM05D009582 ORTHO05D010347 1.0e-09 65.9 47 74.5
Gohir.D11G145833 Gossypium hirsutum HOM05D008218 ORTHO05D010347 1.7e-09 65.1 48 75.0
Thecc.01G219400 Theobroma cacao HOM05D008218 ORTHO05D010347 1.7e-09 65.1 48 75.0
CiPaw.13G048900 Carya illinoinensis HOM05D008218 ORTHO05D010347 2.2e-09 64.7 48 72.9
Solyc06g063400.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 4.9e-09 63.5 49 71.4
Solyc06g063390.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 6.5e-09 63.2 49 71.4
AL3G18510 Arabidopsis lyrata HOM05D008218 ORTHO05D010347 8.4e-09 62.8 48 72.9
AT3G07230 Arabidopsis thaliana HOM05D008218 ORTHO05D010347 8.4e-09 62.8 48 72.9
Duzib211G0660 Durio zibethinus HOM05D008218 ORTHO05D010347 1.9e-08 61.6 48 70.8
Thhalv10021897m.g Eutrema salsugineum HOM05D008218 ORTHO05D010347 1.9e-08 61.6 48 70.8
Duzib133G0946 Durio zibethinus HOM05D008218 ORTHO05D010347 2.5e-08 61.2 48 70.8
Manes.12G047600 Manihot esculenta HOM05D008218 ORTHO05D010347 2.5e-08 61.2 48 68.8
Manes.13G049700 Manihot esculenta HOM05D008218 ORTHO05D010347 2.5e-08 61.2 48 70.8
CsaV3_3G030050 Cucumis sativus L. HOM05D008218 ORTHO05D010347 3.2e-08 60.8 47 72.3
TWI18G1398 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 4.2e-08 60.5 45 71.1
Gohir.A07G093000 Gossypium hirsutum HOM05D008218 ORTHO05D010347 5.5e-08 60.1 48 68.8
Carub.0003s0676 Capsella rubella HOM05D008218 ORTHO05D010347 7.1e-08 59.7 48 70.8
CiPaw.14G038700 Carya illinoinensis HOM05D008218 ORTHO05D010347 7.1e-08 59.7 48 66.7
Gohir.A11G139700 Gossypium hirsutum HOM05D008218 ORTHO05D010347 7.1e-08 59.7 48 77.1
FAN24G2161 Fragaria x ananassa HOM05D008218 ORTHO05D010347 9.3e-08 59.3 68 54.4
CARHR081880 Cardamine hirsuta HOM05D008218 ORTHO05D010347 1.6e-07 58.5 48 68.8
Mapoly0087s0005 Marchantia polymorpha HOM05D008218 ORTHO05D010347 1.6e-07 58.5 48 64.6
TWI75G0809 Tripterygium wilfordii HOM05D008218 ORTHO05D010347 1.6e-07 58.5 48 66.7
Nn7g36571 Nelumbo nucifera HOM05D008218 ORTHO05D010347 2.1e-07 58.2 48 66.7
Potri.014G191300 Populus trichocarpa HOM05D008218 ORTHO05D010347 2.1e-07 58.2 48 66.7
Hma1.2p1_0226F.1_g095360 Hydrangea macrophylla HOM05D008218 ORTHO05D010347 2.7e-07 57.8 48 66.7
PGR044G2382 Punica granatum HOM05D008218 ORTHO05D010347 3.5e-07 57.4 48 66.7
Lalb_Chr19g0125871 Lupinus albus HOM05D008218 ORTHO05D010347 4.6e-07 57.0 46 65.2
Os12g0405700 Oryza sativa ssp. japonica HOM05D008218 ORTHO05D010347 4.6e-07 57.0 49 69.4
PSO017G0111 Papaver somniferum HOM05D008218 ORTHO05D010347 6.0e-07 56.6 48 70.8
PSO170G1121 Papaver somniferum HOM05D008218 ORTHO05D010347 6.0e-07 56.6 48 70.8
PSO170G3918 Papaver somniferum HOM05D008218 ORTHO05D010347 6.0e-07 56.6 48 70.8
CAN.G874.7 Capsicum annuum HOM05D008218 ORTHO05D010347 1.0e-06 55.8 48 64.6
Solyc06g083340.3 Solanum lycopersicum HOM05D008218 ORTHO05D010347 1.0e-06 55.8 48 64.6
PGSC0003DMG400020101 Solanum tuberosum HOM05D008218 ORTHO05D010347 1.0e-06 55.8 48 64.6
Aa31LG5G17820 Aethionema arabicum HOM05D008218 ORTHO05D010347 1.3e-06 55.5 48 64.6
Migut.D02504 Erythranthe guttata HOM05D008218 ORTHO05D010347 2.3e-06 54.7 48 64.6
Nitab4.5_0013864g0040 Nicotiana tabacum HOM05D008218 ORTHO05D010347 2.3e-06 54.7 47 61.7
PSO357G0222 Papaver somniferum HOM05D008218 ORTHO05D010347 2.3e-06 54.7 48 68.8
Glyma.08G348200 Glycine max HOM05D008218 ORTHO05D010347 3.9e-06 53.9 48 62.5
Glyma.18G159800 Glycine max HOM05D008218 ORTHO05D010347 3.9e-06 53.9 48 62.5
Hund18437 Selenicereus undatus HOM05D008218 ORTHO05D010347 3.9e-06 53.9 48 62.5
THA.LOC104818972 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 3.9e-06 53.9 48 64.6
THA.LOC104822489 Tarenaya hassleriana HOM05D008218 ORTHO05D010347 3.9e-06 53.9 48 64.6
EL10Ac7g17908 Beta vulgaris HOM05D008218 ORTHO05D010347 8.7e-06 52.8 47 59.6


User provided reference genes

Program Settings