Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 7.4e-76 287.3 168 100.0
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.3e-61 240.0 168 87.5
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.9e-60 236.1 165 87.9
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 1.4e-58 229.9 168 77.4
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 3.0e-53 212.2 171 78.4
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 8.8e-53 210.7 169 76.9
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.7e-51 205.3 165 80.0
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.4e-50 202.6 174 74.1
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-49 199.9 143 76.9
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-48 196.8 143 75.5
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 1.6e-46 189.9 107 90.7
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.1e-46 189.5 172 72.7
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 4.7e-46 188.3 170 74.1
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.8e-45 186.4 174 67.8
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 2.3e-45 186.0 170 71.2
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.3e-45 186.0 168 71.4
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 3.9e-45 185.3 170 70.0
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.0e-41 172.9 142 66.9
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 2.6e-41 172.6 142 65.5
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 7.7e-41 171.0 146 67.1
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.5e-39 166.8 143 63.6
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.6e-38 163.3 170 67.6
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 2.7e-38 162.5 155 69.0
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.7e-38 161.8 151 64.9
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 4.7e-38 161.8 164 67.1
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 6.1e-38 161.4 153 68.6
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 8.0e-38 161.0 175 65.1
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.0e-37 160.6 164 65.2
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.3e-37 159.5 134 73.9
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 3.0e-37 159.1 142 64.1
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 5.2e-37 158.3 168 66.7
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.1e-36 157.1 168 65.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.1e-36 157.1 163 65.0
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 2.6e-36 156.0 163 64.4
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 4.4e-36 155.2 147 66.0
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 7.5e-36 154.5 165 66.7
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.3e-35 153.7 140 59.3
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.7e-35 153.3 165 64.2
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 2.8e-35 152.5 107 86.0
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 6.3e-35 151.4 150 67.3
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 6.3e-35 151.4 172 64.0
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 8.2e-35 151.0 150 60.7
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 1.8e-34 149.8 168 63.7
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 2.4e-34 149.4 165 62.4
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 5.3e-34 148.3 111 82.0
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 9.1e-34 147.5 135 68.1
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 9.1e-34 147.5 113 68.1
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 2.7e-33 146.0 140 69.3
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.7e-33 146.0 143 58.7
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 3.5e-33 145.6 165 62.4
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 3.5e-33 145.6 148 64.9
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 5.9e-33 144.8 139 61.9
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 7.7e-33 144.4 86 81.4
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 7.7e-33 144.4 166 62.0
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.7e-32 143.3 126 61.1
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 2.2e-32 142.9 161 58.4
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.9e-32 142.5 165 60.0
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 3.8e-32 142.1 165 61.2
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.0e-32 141.7 82 82.9
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.5e-31 140.2 165 59.4
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-31 139.8 143 57.3
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 5.5e-31 138.3 142 69.0
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 5.5e-31 138.3 82 80.5
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 9.4e-31 137.5 165 57.6
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 9.4e-31 137.5 145 58.6
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.6e-30 136.7 165 53.9
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 2.1e-30 136.3 165 53.3
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 3.6e-30 135.6 142 61.3
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 4.7e-30 135.2 165 53.3
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.1e-30 134.8 84 79.8
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 6.1e-30 134.8 168 60.1
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 8.0e-30 134.4 144 53.5
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.4e-29 133.7 119 64.7
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.8e-29 133.3 116 63.8
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.3e-29 132.9 143 55.9
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 3.0e-29 132.5 94 70.2
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 3.0e-29 132.5 99 83.8
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 3.0e-29 132.5 134 61.2
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 4.0e-29 132.1 93 72.0
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 6.8e-29 131.3 112 74.1
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 6.8e-29 131.3 145 54.5
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 6.8e-29 131.3 165 53.3
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 6.8e-29 131.3 142 55.6
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 8.8e-29 131.0 144 52.1
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 8.8e-29 131.0 82 73.2
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 2.0e-28 129.8 113 71.7
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 2.0e-28 129.8 105 62.9
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 2.6e-28 129.4 77 77.9
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 3.4e-28 129.0 161 49.7
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 5.7e-28 128.3 168 57.1
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 5.7e-28 128.3 83 72.3
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 7.5e-28 127.9 93 71.0
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 9.8e-28 127.5 112 71.4
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 9.8e-28 127.5 112 71.4
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 9.8e-28 127.5 112 71.4
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 9.8e-28 127.5 112 71.4
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.7e-27 126.7 93 69.9
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 2.2e-27 126.3 99 67.7
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 2.8e-27 125.9 152 55.3
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.1e-26 124.0 79 73.4
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 7.0e-26 121.3 142 49.3
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 2.0e-25 119.8 147 53.7
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 3.5e-25 119.0 82 68.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 5.9e-25 118.2 126 64.3
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 4.2e-23 112.1 86 66.3
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 4.2e-23 112.1 120 64.2
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 5.5e-23 111.7 141 45.4
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 7.2e-23 111.3 144 49.3
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.2e-22 110.5 82 63.4
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 3.6e-22 109.0 112 67.0
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 4.7e-22 108.6 171 46.8
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 8.0e-22 107.8 113 54.0
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 8.0e-22 107.8 106 57.5
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.3e-21 106.3 120 52.5
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 3.0e-21 105.9 164 54.3
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.5e-20 103.6 119 48.7
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 5.7e-20 101.7 143 45.5
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.3e-19 100.5 60 73.3
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.3e-19 100.5 142 43.7
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.8e-19 99.4 142 43.0
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 5.4e-18 95.1 91 59.3
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 5.9e-17 91.7 127 52.0
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-16 90.5 84 75.0
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.3e-16 90.5 84 75.0
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.9e-16 89.4 84 65.5
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 2.5e-15 86.3 115 51.3
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 3.3e-15 85.9 67 62.7
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 3.3e-15 85.9 67 62.7
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 7.3e-15 84.7 109 50.5
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.2e-14 84.0 122 48.4
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.2e-14 84.0 139 46.0
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.0e-13 79.3 91 49.5
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 4.6e-09 65.5 100 40.0
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 2.5e-07 59.7 64 59.4
BolC2t06845H Brassica oleracea HOM05D005516 ORTHO05D006713 4.7e-06 55.5 55 58.2
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 8.0e-06 54.7 35 68.6


User provided reference genes

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