Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 8.0e-183 643.7 332 100.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 1.1e-176 623.2 330 97.0
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.2e-175 619.8 330 96.7
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.0e-174 616.7 333 95.8
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.0e-174 616.7 333 95.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 3.5e-170 601.7 330 93.6
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.9e-169 598.2 325 94.2
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.5e-168 596.3 332 91.6
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 5.6e-168 594.3 328 92.1
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 5.6e-168 594.3 371 85.7
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 9.5e-168 593.6 327 92.7
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.2e-167 593.2 328 91.8
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 2.1e-167 592.4 328 91.8
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.8e-167 592.0 328 92.4
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 3.6e-167 591.7 332 91.6
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 4.7e-167 591.3 332 91.6
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.8e-166 589.3 330 90.9
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.8e-166 587.4 329 91.2
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 6.8e-166 587.4 332 90.7
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 8.9e-166 587.0 330 90.9
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.5e-165 586.3 329 90.9
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 3.4e-165 585.1 329 90.6
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 4.4e-165 584.7 328 90.9
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.5e-165 583.9 329 90.6
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.8e-165 583.6 329 90.0
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.3e-164 583.2 329 91.2
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 2.2e-164 582.4 330 90.0
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 4.9e-164 581.3 327 90.8
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 4.9e-164 581.3 330 90.0
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.4e-163 579.7 330 89.7
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 5.4e-163 577.8 330 89.7
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.2e-162 576.6 327 90.2
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 2.7e-162 575.5 328 88.1
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 6.0e-162 574.3 329 87.8
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 7.8e-162 573.9 327 89.6
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.7e-161 572.8 330 88.8
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.7e-161 572.8 330 88.8
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.3e-161 572.4 330 89.1
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.3e-161 572.4 327 88.7
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.3e-161 572.4 327 88.7
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.3e-161 572.4 330 89.7
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 2.3e-161 572.4 327 88.4
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 3.0e-161 572.0 328 89.6
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 3.9e-161 571.6 330 87.6
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 5.0e-161 571.2 327 88.4
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 5.0e-161 571.2 329 87.8
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 6.6e-161 570.9 328 89.3
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 6.6e-161 570.9 330 88.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-160 570.1 329 87.5
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-160 570.1 329 87.5
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.1e-160 570.1 329 87.5
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.1e-160 570.1 329 87.5
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.5e-160 569.7 329 87.5
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.5e-160 568.9 330 88.2
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 4.3e-160 568.2 329 87.5
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.3e-160 568.2 330 87.0
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.6e-160 567.8 330 87.9
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 7.3e-160 567.4 330 86.7
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.2e-159 566.6 330 87.6
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 2.1e-159 565.8 329 86.6
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.8e-159 565.5 326 88.0
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 2.8e-159 565.5 331 85.5
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 2.8e-159 565.5 331 86.1
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.8e-159 565.5 330 87.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 3.6e-159 565.1 329 86.9
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 4.7e-159 564.7 329 86.9
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 6.2e-159 564.3 330 86.4
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 6.2e-159 564.3 330 86.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.1e-158 563.5 327 86.5
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.8e-158 562.8 330 85.8
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.3e-158 562.4 327 89.3
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 2.3e-158 562.4 328 88.7
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 2.3e-158 562.4 330 85.8
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 2.3e-158 562.4 357 81.5
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 3.1e-158 562.0 329 86.3
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 3.1e-158 562.0 327 87.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 3.1e-158 562.0 382 78.5
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 4.0e-158 561.6 336 86.6
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 8.9e-158 560.5 325 88.6
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.2e-157 560.1 325 87.4
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.0e-157 559.3 332 84.9
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.0e-157 559.3 330 87.9
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 3.4e-157 558.5 331 85.5
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.7e-156 556.2 330 86.1
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 4.9e-156 554.7 331 85.2
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.4e-155 552.4 327 85.9
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 9.2e-155 550.4 454 67.8
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.1e-154 549.3 329 84.8
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.6e-154 548.1 330 85.2
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 4.6e-154 548.1 325 84.9
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 6.0e-154 547.7 331 84.0
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.7e-153 546.2 330 84.5
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.7e-153 546.2 331 83.7
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.1e-152 543.5 314 86.9
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 3.6e-151 538.5 330 84.5
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.8e-149 531.2 304 89.5
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-147 526.9 330 84.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.6e-146 523.1 328 82.3
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.7e-146 522.3 329 83.0
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.0e-145 520.4 328 81.4
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.9e-145 518.5 332 81.0
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 8.6e-145 517.3 291 89.3
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.3e-140 503.4 331 76.7
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.6e-138 496.5 330 76.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.7e-138 495.7 300 86.3
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.7e-138 495.7 330 79.7
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.6e-138 495.0 376 72.1
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 2.1e-135 486.1 326 75.2
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.8e-134 483.0 331 77.3
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 3.5e-130 468.8 329 75.4
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.3e-129 466.8 279 84.2
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 5.1e-129 464.9 335 75.2
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 6.2e-119 431.4 323 71.5
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.1e-113 411.8 324 61.7
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 5.1e-113 411.8 234 89.7
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.1e-112 410.6 330 64.5
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 9.7e-112 407.5 318 64.2
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-107 393.3 233 85.8
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.0e-105 387.5 274 74.8
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.8e-105 386.7 321 66.0
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.9e-97 359.0 329 64.1
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.2e-95 353.2 197 92.4
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 1.8e-94 350.1 335 61.8
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 6.5e-92 341.7 235 71.9
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.4e-89 334.0 227 76.2
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 9.7e-88 327.8 220 80.9
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 5.3e-86 322.0 220 79.1
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 6.1e-82 308.5 167 92.8
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 8.0e-82 308.1 220 77.7
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 3.1e-78 296.2 333 47.1
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.6e-77 293.9 163 92.6
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 5.2e-73 278.9 329 53.5
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 5.4e-70 268.9 163 81.6
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.6e-66 256.1 267 56.2
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 2.6e-64 250.0 133 93.2
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.2e-58 231.1 130 90.0
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 6.4e-47 192.2 162 66.0
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.4e-46 189.1 102 89.2
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 4.3e-43 179.5 196 52.0
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 3.4e-40 169.9 205 52.7
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.4e-38 164.5 90 91.1
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 3.5e-37 159.8 103 80.6
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-35 154.8 89 86.5
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 2.6e-32 143.7 88 79.5
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 3.4e-32 143.3 77 92.2
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.7e-31 141.0 89 83.1
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 4.2e-30 136.3 69 92.8
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 6.0e-29 132.5 74 86.5
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 2.3e-28 130.6 80 80.0
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.2e-26 124.8 91 72.5
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-24 117.9 75 77.3
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-23 114.4 65 87.7
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-22 111.7 69 82.6
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 4.2e-22 109.8 151 45.0
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 2.3e-20 104.0 63 84.1
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.9e-11 74.3 85 51.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 4.5e-08 63.2 55 61.8
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.8e-08 62.8 33 87.9


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