Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G215100 Theobroma cacao HOM05D001491 ORTHO05D001443 3.0e-40 167.9 77 100.0
Duzib177G1139 Durio zibethinus HOM05D001491 ORTHO05D001443 1.2e-25 119.4 71 74.6
COL.COLO4_15224 Corchorus olitorius HOM05D001491 ORTHO05D001443 3.9e-24 114.4 71 67.6
Thecc.05G215200 Theobroma cacao HOM05D001491 ORTHO05D001443 6.7e-24 113.6 70 71.4
Haze_00418 Corylus avellana HOM05D001491 ORTHO05D001443 6.3e-22 107.1 70 65.7
CiPaw.05G219000 Carya illinoinensis HOM05D001491 ORTHO05D001443 1.1e-21 106.3 70 67.1
QL09p023701 Quercus lobata HOM05D001491 ORTHO05D001443 3.1e-21 104.8 70 64.3
Cfa016039 Carpinus fangiana HOM05D001491 ORTHO05D001443 9.0e-21 103.2 68 64.7
TAR375G1059 Trochodendron aralioides HOM05D001491 ORTHO05D001443 2.0e-20 102.1 69 60.9
Rhsim03G0222100 Rhododendron simsii HOM05D001491 ORTHO05D001443 5.9e-20 100.5 70 61.4
Dinv17254 Davidia involucrata HOM05D001491 ORTHO05D001443 2.2e-19 98.6 70 60.0
Actinidia34314 Actinidia chinensis HOM05D001491 ORTHO05D001443 2.9e-19 98.2 70 60.0
GSVIVG01024384001 Vitis vinifera HOM05D001491 ORTHO05D001443 6.5e-19 97.1 70 60.0
vmacro06515 Vaccinium macrocarpon HOM05D001491 ORTHO05D001443 1.1e-18 96.3 69 58.0
CSS0027938 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 1.4e-18 95.9 70 60.0
Hma1.2p1_1680F.1_g297130 Hydrangea macrophylla HOM05D001491 ORTHO05D001443 3.6e-17 91.3 70 54.3
MBI04_g44373_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 2.5e-15 85.1 73 52.1
MBI04_g32202_MAGBIO Magnolia biondii HOM05D001491 ORTHO05D001443 4.3e-15 84.3 69 53.6
AUR62028183 Chenopodium quinoa HOM05D001491 ORTHO05D001443 1.3e-14 82.8 67 55.2
Ah.04g156640 Amaranthus hybridus HOM05D001491 ORTHO05D001443 6.3e-14 80.5 67 55.2
AUR62002070 Chenopodium quinoa HOM05D001491 ORTHO05D001443 4.1e-13 77.8 69 52.2
Zm00001eb379090 Zea mays HOM05D001491 ORTHO05D001443 2.6e-12 75.1 68 51.5
Manes.09G126200 Manihot esculenta HOM05D001491 ORTHO05D001443 6.5e-11 70.5 67 50.7
CANSAT56G0589 Cannabis sativa HOM05D001491 ORTHO05D001443 3.2e-10 68.2 68 47.1
PGR142G3107 Punica granatum HOM05D001491 ORTHO05D001443 3.2e-10 68.2 57 56.1
Os06g0112100 Oryza sativa ssp. japonica HOM05D001491 ORTHO05D001443 5.5e-10 67.4 69 44.9
Manes.09G126100 Manihot esculenta HOM05D001491 ORTHO05D001443 9.4e-10 66.6 68 48.5
Nn6g35102 Nelumbo nucifera HOM05D001491 ORTHO05D001443 9.4e-10 66.6 65 49.2
EL10Ac3g05068 Beta vulgaris HOM05D001491 ORTHO05D001443 2.1e-09 65.5 66 45.5
Ciclev10023782m.g Citrus clementina HOM05D001491 ORTHO05D001443 3.6e-09 64.7 48 62.5
Sabra13G0086300 Salix brachista HOM05D001491 ORTHO05D001443 3.6e-09 64.7 55 47.3
PGSC0003DMG400027354 Solanum tuberosum HOM05D001491 ORTHO05D001443 4.6e-09 64.3 64 45.3
Potri.013G081233 Populus trichocarpa HOM05D001491 ORTHO05D001443 7.9e-09 63.5 52 50.0
Potri.013G082066 Populus trichocarpa HOM05D001491 ORTHO05D001443 7.9e-09 63.5 52 50.0
Potri.013G082800 Populus trichocarpa HOM05D001491 ORTHO05D001443 7.9e-09 63.5 52 50.0
Hma1.2p1_1625F.1_g294290 Hydrangea macrophylla HOM05D001491 ORTHO05D001443 1.0e-08 63.2 76 44.7
Potri.013G080300 Populus trichocarpa HOM05D001491 ORTHO05D001443 1.0e-08 63.2 52 50.0
Potri.013G082700 Populus trichocarpa HOM05D001491 ORTHO05D001443 1.0e-08 63.2 52 50.0
Dinv31278 Davidia involucrata HOM05D001491 ORTHO05D004473 1.4e-08 62.8 68 45.6
RcHm_v2.0_Chr1g0361871 Rosa chinensis HOM05D001491 ORTHO05D001443 1.4e-08 62.8 55 45.5
Sabra13G0087000 Salix brachista HOM05D001491 ORTHO05D001443 1.4e-08 62.8 55 49.1
ATR0048G012 Amborella trichopoda HOM05D001491 ORTHO05D001443 3.0e-08 61.6 64 45.3
Rhsim09G0144600 Rhododendron simsii HOM05D001491 ORTHO05D001443 3.0e-08 61.6 63 44.4
Sabra13G0086100 Salix brachista HOM05D001491 ORTHO05D001443 3.0e-08 61.6 52 50.0
Solyc11g007730.2 Solanum lycopersicum HOM05D001491 ORTHO05D001443 3.9e-08 61.2 64 43.8
Sopen11g003590 Solanum pennellii HOM05D001491 ORTHO05D001443 3.9e-08 61.2 64 43.8
Cc02_g10400 Coffea canephora HOM05D001491 ORTHO05D001443 5.1e-08 60.8 55 47.3
Potri.013G101000 Populus trichocarpa HOM05D001491 ORTHO05D001443 5.1e-08 60.8 55 49.1
Cc02_g10370 Coffea canephora HOM05D001491 ORTHO05D001443 6.7e-08 60.5 56 46.4
Sabra13G0086200 Salix brachista HOM05D001491 ORTHO05D001443 6.7e-08 60.5 52 50.0
Cfa011203 Carpinus fangiana HOM05D001491 ORTHO05D001443 8.8e-08 60.1 55 49.1
Lalb_Chr02g0151251 Lupinus albus HOM05D001491 ORTHO05D001443 8.8e-08 60.1 64 42.2
Potri.008G028700 Populus trichocarpa HOM05D001491 ORTHO05D001443 1.1e-07 59.7 63 42.9
Potri.013G080400 Populus trichocarpa HOM05D001491 ORTHO05D001443 1.1e-07 59.7 52 44.2
Potri.013G100700 Populus trichocarpa HOM05D001491 ORTHO05D001443 1.1e-07 59.7 55 45.5
Sabra13G0087100 Salix brachista HOM05D001491 ORTHO05D001443 1.1e-07 59.7 52 48.1
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.1e-07 59.7 60 46.7
Actinidia38898 Actinidia chinensis HOM05D001491 ORTHO05D001443 1.5e-07 59.3 76 39.5
CAN.G135.52 Capsicum annuum HOM05D001491 ORTHO05D001443 1.5e-07 59.3 64 43.8
QL04p040420 Quercus lobata HOM05D001491 ORTHO05D001443 1.5e-07 59.3 55 47.3
Cpa.g.sc128.63 Carica papaya HOM05D001491 ORTHO05D001443 2.0e-07 58.9 64 43.8
Potri.013G100800 Populus trichocarpa HOM05D001491 ORTHO05D001443 2.0e-07 58.9 52 48.1
Sabra13G0086500 Salix brachista HOM05D001491 ORTHO05D001443 2.6e-07 58.5 52 50.0
TAR383G0535 Trochodendron aralioides HOM05D001491 ORTHO05D001443 4.4e-07 57.8 63 46.0
TAR636G2113 Trochodendron aralioides HOM05D001491 ORTHO05D001443 4.4e-07 57.8 71 40.8
GSVIVG01034674001 Vitis vinifera HOM05D001491 ORTHO05D001443 4.4e-07 57.8 55 45.5
AUR62006123 Chenopodium quinoa HOM05D001491 ORTHO05D026522 5.7e-07 57.4 65 36.9
Manes.16G113100 Manihot esculenta HOM05D001491 ORTHO05D001443 5.7e-07 57.4 63 46.0
EL10Ac3g05314 Beta vulgaris HOM05D001491 ORTHO05D026522 7.4e-07 57.0 65 38.5
Potri.008G028500 Populus trichocarpa HOM05D001491 ORTHO05D001443 7.4e-07 57.0 55 41.8
Potri.008G028600 Populus trichocarpa HOM05D001491 ORTHO05D001443 7.4e-07 57.0 55 43.6
AUR62019363 Chenopodium quinoa HOM05D001491 ORTHO05D026522 9.7e-07 56.6 65 36.9
SEGI_30523 Sequoiadendron giganteum HOM05D001491 ORTHO05D001443 9.7e-07 56.6 64 37.5
Atru.chr12.934 Acer truncatum HOM05D001491 ORTHO05D001443 2.2e-06 55.5 64 42.2
ATR0315G051 Amborella trichopoda HOM05D001491 ORTHO05D001443 2.2e-06 55.5 63 46.0
BcaC09g50874 Brassica carinata HOM05D001491 ORTHO05D001443 2.2e-06 55.5 56 48.2
CSS0025330 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 2.2e-06 55.5 55 45.5
CSS0036276 Camellia sinensis var. sinensis HOM05D001491 ORTHO05D001443 2.2e-06 55.5 68 41.2
Thecc.09G106200 Theobroma cacao HOM05D001491 ORTHO05D001443 2.2e-06 55.5 63 42.9
Atru.chr7.1379 Acer truncatum HOM05D001491 ORTHO05D001443 2.8e-06 55.1 63 42.9
Cc00_g11320 Coffea canephora HOM05D001491 ORTHO05D001443 3.7e-06 54.7 54 46.3
Potri.019G050200 Populus trichocarpa HOM05D001491 ORTHO05D001443 3.7e-06 54.7 64 40.6
arahy.Tifrunner.gnm1.ann1.8Y74W7 Arachis hypogaea HOM05D001491 ORTHO05D001443 4.8e-06 54.3 55 43.6
arahy.Tifrunner.gnm1.ann1.AZ5764 Arachis hypogaea HOM05D001491 ORTHO05D001443 4.8e-06 54.3 55 43.6
C01p19690 Brassica napus HOM05D001491 ORTHO05D001443 4.8e-06 54.3 56 48.2
BolC1t01896H Brassica oleracea HOM05D001491 ORTHO05D001443 4.8e-06 54.3 56 48.2
AT4G24350 Arabidopsis thaliana HOM05D001491 ORTHO05D001443 6.3e-06 53.9 64 43.8
Sabra13G0086700 Salix brachista HOM05D001491 ORTHO05D001443 6.3e-06 53.9 52 46.2
THA.LOC104799817 Tarenaya hassleriana HOM05D001491 ORTHO05D001443 6.3e-06 53.9 56 46.4
CARHR231770 Cardamine hirsuta HOM05D001491 ORTHO05D001443 8.2e-06 53.5 56 42.9


User provided reference genes

Program Settings