Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G210800 Theobroma cacao HOM05D014430 ORTHO05D002259 2.4e-133 478.8 232 100.0
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 4.8e-17 92.4 90 50.0
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.0e-14 84.7 105 41.9
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 3.8e-14 82.8 126 35.7
Thecc.01G196800 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-13 81.3 133 33.1
Thecc.02G247200 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-13 80.9 92 43.5
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 1.4e-13 80.9 171 33.3
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 3.2e-13 79.7 102 41.2
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 4.2e-13 79.3 155 32.3
Thecc.09G250800 Theobroma cacao HOM05D000003 ORTHO05D002259 5.5e-13 79.0 130 36.2
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 9.4e-13 78.2 149 29.5
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-12 77.8 149 30.2
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 3.6e-12 76.3 97 38.1
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 6.1e-12 75.5 106 34.9
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 7.9e-12 75.1 103 37.9
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.0e-11 74.7 127 34.6
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-11 74.3 123 34.1
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.8e-11 73.9 103 35.9
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-11 73.9 111 33.3
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 6.7e-11 72.0 160 27.5
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.5e-10 70.9 106 40.6
Thecc.07G137100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.0e-10 70.5 99 39.4
Atru.chr8.1166 Acer truncatum HOM05D003047 ORTHO05D000627 3.3e-10 69.7 252 26.2
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 7.4e-10 68.6 139 31.7
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-09 67.8 107 31.8
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.8e-09 66.6 116 31.9
Hma1.2p1_0897F.1_g234290 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 2.8e-09 66.6 95 34.7
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-09 66.2 119 34.5
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-08 63.9 126 31.7
Atru.chr2.1988 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-08 63.9 175 26.9
Atru.chr1.2519 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-08 63.5 246 24.0
Atru.chr2.1999 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-08 63.5 165 24.8
Atru.chr4.2618 Acer truncatum HOM05D000003 ORTHO05D002259 4.1e-08 62.8 249 24.5
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 4.1e-08 62.8 110 29.1
Thecc.05G204200 Theobroma cacao HOM05D000003 ORTHO05D000004 5.3e-08 62.4 109 35.8
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.0e-07 60.5 114 27.2
Atru.chr5.2972 Acer truncatum HOM05D000003 ORTHO05D002259 2.6e-07 60.1 91 37.4
Atru.chr6.600 Acer truncatum HOM05D000003 ORTHO05D002259 2.6e-07 60.1 197 26.4
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-07 59.7 153 26.8
Atru.chr6.1326 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-07 59.7 194 24.7
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-07 59.7 156 29.5
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 58.2 129 27.1
MBI18_g30684_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 57.8 44 56.8
Atru.chr3.2341 Acer truncatum HOM05D000003 ORTHO05D002259 2.2e-06 57.0 166 24.7
Gohir.A06G181801 Gossypium hirsutum HOM05D014430 ORTHO05D002259 2.2e-06 57.0 143 30.1
Atru.chr7.675 Acer truncatum HOM05D000003 ORTHO05D002259 2.9e-06 56.6 100 29.0
MBI17_g38043_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-06 56.6 55 45.5
Thecc.08G169100 Theobroma cacao HOM05D000003 ORTHO05D023207 2.9e-06 56.6 44 54.5
Gohir.D06G188501 Gossypium hirsutum HOM05D014430 ORTHO05D002259 6.5e-06 55.5 143 29.4
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 8.5e-06 55.1 145 29.0
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 8.5e-06 55.1 130 26.9
Atru.chr7.381 Acer truncatum HOM05D000003 ORTHO05D002259 8.5e-06 55.1 169 27.2
Gorai.010G220900 Gossypium raimondii HOM05D014430 ORTHO05D002259 8.5e-06 55.1 143 29.4
MBI08_g34221_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.5e-06 55.1 74 35.1


User provided reference genes

Program Settings