Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G209400 Theobroma cacao HOM05D000005 ORTHO05D000012 3.3e-225 784.6 375 100.0
Thecc.05G210400 Theobroma cacao HOM05D000005 ORTHO05D000012 5.5e-148 528.1 375 68.3
Thecc.06G026300 Theobroma cacao HOM05D000005 ORTHO05D000012 5.9e-142 508.1 376 67.0
Thecc.05G210700 Theobroma cacao HOM05D000005 ORTHO05D000012 7.7e-142 507.7 377 66.6
Thecc.06G027100 Theobroma cacao HOM05D000005 ORTHO05D000294 2.6e-137 492.7 369 66.1
Duzib128G1817 Durio zibethinus HOM05D000005 ORTHO05D000012 5.1e-93 345.5 383 49.9
Duzib213G0233 Durio zibethinus HOM05D000005 ORTHO05D000012 7.3e-92 341.7 359 52.9
Gohir.D03G164800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.0e-90 334.7 380 48.4
Gohir.D03G163700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.0e-89 333.6 380 47.9
Gohir.D03G163801 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.6e-89 331.6 381 47.2
Gohir.D03G164700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.9e-89 331.3 380 47.9
Gorai.003G173100 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.9e-89 331.3 380 47.9
Duzib128G0109 Durio zibethinus HOM05D000005 ORTHO05D000012 4.9e-88 328.9 374 47.9
Gohir.D03G163600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.4e-87 327.4 378 47.4
Gorai.003G172400 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.1e-87 325.1 380 46.6
Gorai.003G173900 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.1e-86 323.6 380 46.8
Gohir.D03G164200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.5e-86 322.8 380 46.6
Gorai.003G173800 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.9e-86 321.6 378 46.3
Gohir.D03G164000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-85 320.9 380 46.3
Gorai.003G173200 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.0e-85 319.7 379 46.4
Gorai.003G174400 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.1e-85 318.9 378 46.3
Gohir.D03G163900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-83 314.3 371 46.6
Gorai.003G174500 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.6e-83 313.9 378 46.8
Gohir.D03G163851 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.1e-83 311.6 380 45.8
Gohir.D03G164300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.4e-82 310.1 378 45.5
Gohir.D03G164900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.1e-79 298.5 382 44.8
Thecc.06G027800 Theobroma cacao HOM05D000005 ORTHO05D000012 5.3e-74 282.3 185 71.4
Gorai.003G173400 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.5e-68 264.2 380 41.3
Thecc.03G043800 Theobroma cacao HOM05D000005 ORTHO05D000012 5.7e-60 235.7 192 61.5
Gorai.003G172700 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.3e-58 229.2 378 37.6
Gorai.003G174200 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.6e-57 226.9 284 44.4
Thecc.05G210200 Theobroma cacao HOM05D000005 ORTHO05D000012 1.7e-56 224.2 143 72.7
Gohir.D03G164400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.2e-46 191.4 233 46.4
Gohir.D03G163750 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.7e-43 179.9 218 46.8
Gorai.003G172600 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.1e-42 176.8 194 50.0
Gorai.003G173700 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.2e-40 170.6 216 45.4
Duzib128G0099 Durio zibethinus HOM05D000005 ORTHO05D000012 1.3e-32 144.8 117 59.0
Duzib128G0663 Durio zibethinus HOM05D000005 ORTHO05D000012 4.7e-30 136.3 103 61.2
Manes.06G012900 Manihot esculenta HOM05D000005 ORTHO05D000012 1.7e-16 91.3 173 34.7
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 9.5e-15 85.5 138 36.2
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-14 84.7 187 33.2
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 2.1e-14 84.3 173 33.5
Prupe.2G101900 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-13 81.3 186 31.2
Nitab4.5_0001085g0170 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.3e-13 80.9 143 35.0
Nitab4.5_0006159g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 4.0e-13 80.1 143 35.7
Prupe.3G009700 Prunus persica HOM05D000005 ORTHO05D000012 5.2e-13 79.7 175 32.0
Dinv29649 Davidia involucrata HOM05D000005 ORTHO05D000012 3.4e-12 77.0 138 36.2
Potri.001G028750 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.4e-12 76.6 114 35.1
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 7.5e-12 75.9 180 29.4
Prupe.3G130900 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-11 75.1 187 31.0
Prupe.8G184900 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-11 74.7 189 30.7
CSS0040509 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.2e-11 74.3 198 31.8
CAN.G1372.3 Capsicum annuum HOM05D000005 ORTHO05D000012 2.2e-11 74.3 143 34.3
MD07G1112300 Malus domestica HOM05D000005 ORTHO05D000012 2.2e-11 74.3 206 31.1
Manes.11G061000 Manihot esculenta HOM05D000005 ORTHO05D000012 2.2e-11 74.3 180 31.1
HanXRQChr13g0403841 Helianthus annuus HOM05D000005 ORTHO05D000012 3.7e-11 73.6 151 33.1
CSS0004944 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 8.3e-11 72.4 101 35.6
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 8.3e-11 72.4 147 29.9
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 8.3e-11 72.4 178 28.1
Cpa.g.sc4.86 Carica papaya HOM05D000005 ORTHO05D000012 2.4e-10 70.9 172 30.8
Cpa.g.sc4.91 Carica papaya HOM05D000005 ORTHO05D000012 2.4e-10 70.9 178 30.3
FAN24G1486 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.4e-10 70.9 168 26.8
CSS0032356 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.2e-10 70.5 120 32.5
Lj3C725T19 Lonicera japonica HOM05D000005 ORTHO05D000012 3.2e-10 70.5 152 28.9
Lsat_1_v5_gn_8_112140 Lactuca sativa HOM05D000005 ORTHO05D000012 4.1e-10 70.1 150 28.7
MD07G1079200 Malus domestica HOM05D000005 ORTHO05D000012 4.1e-10 70.1 168 31.0
Prupe.3G010300 Prunus persica HOM05D000005 ORTHO05D000012 5.4e-10 69.7 168 33.3
MD07G1079400 Malus domestica HOM05D000005 ORTHO05D000012 7.0e-10 69.3 173 30.1
FvH4_2g20310 Fragaria vesca HOM05D000005 ORTHO05D000012 9.2e-10 68.9 168 26.2
Nitab4.5_0006159g0050 Nicotiana tabacum HOM05D000005 ORTHO05D000012 9.2e-10 68.9 148 27.7
Prupe.3G130800 Prunus persica HOM05D000005 ORTHO05D000012 9.2e-10 68.9 168 32.7
vmacro04573 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 9.2e-10 68.9 145 34.5
Dinv38457 Davidia involucrata HOM05D010983 ORTHO05D000012 1.2e-09 68.6 171 32.2
ECA248G1783 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-09 68.6 133 30.1
RcHm_v2.0_Chr4g0405381 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-09 68.6 177 31.6
CAN.G1379.4 Capsicum annuum HOM05D000005 ORTHO05D000012 1.6e-09 68.2 141 31.9
Lsat_1_v5_gn_1_94481 Lactuca sativa HOM05D000005 ORTHO05D000012 1.6e-09 68.2 164 30.5
Prupe.8G185200 Prunus persica HOM05D000005 ORTHO05D000012 1.6e-09 68.2 161 30.4
MD17G1275000 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-09 67.4 148 31.8
Cpa.g.sc4.82 Carica papaya HOM05D000005 ORTHO05D000012 3.5e-09 67.0 155 31.0
Lsat_1_v5_gn_1_105241 Lactuca sativa HOM05D000005 ORTHO05D000012 3.5e-09 67.0 156 31.4
Lsat_1_v5_gn_1_77560 Lactuca sativa HOM05D000005 ORTHO05D000012 7.8e-09 65.9 135 29.6
MD05G1140100 Malus domestica HOM05D000005 ORTHO05D000012 7.8e-09 65.9 152 32.2
Lsat_1_v5_gn_2_60401 Lactuca sativa HOM05D000005 ORTHO05D000012 1.3e-08 65.1 114 35.1
Dinv29646 Davidia involucrata HOM05D000005 ORTHO05D000012 2.3e-08 64.3 153 30.1
Lsat_1_v5_gn_1_79540 Lactuca sativa HOM05D000005 ORTHO05D000012 2.3e-08 64.3 166 27.7
Dinv38452 Davidia involucrata HOM05D000005 ORTHO05D000012 3.0e-08 63.9 118 37.3
FAN27G2507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-08 63.9 144 28.5
HanXRQChr16g0520121 Helianthus annuus HOM05D000005 ORTHO05D000012 3.0e-08 63.9 115 30.4
ECA248G2949 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.9e-08 63.5 124 33.1
RcHm_v2.0_Chr1g0346831 Rosa chinensis HOM05D000005 ORTHO05D000012 5.0e-08 63.2 211 28.9
MD07G1103200 Malus domestica HOM05D000005 ORTHO05D000012 6.6e-08 62.8 172 29.1
Thecc.05G211000 Theobroma cacao HOM05D000005 ORTHO05D000012 6.6e-08 62.8 42 69.0
Lsat_1_v5_gn_1_80040 Lactuca sativa HOM05D000005 ORTHO05D000012 8.6e-08 62.4 135 28.9
MD15G1416500 Malus domestica HOM05D000005 ORTHO05D000012 8.6e-08 62.4 179 28.5
Nitab4.5_0001085g0150 Nicotiana tabacum HOM05D000005 ORTHO05D000012 8.6e-08 62.4 155 25.8
Lsat_1_v5_gn_1_91860 Lactuca sativa HOM05D000005 ORTHO05D000012 1.1e-07 62.0 125 29.6
PGSC0003DMG401020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.1e-07 62.0 171 30.4
PGSC0003DMG402020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.1e-07 62.0 171 30.4
Hma1.2p1_0188F.1_g082485 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 1.5e-07 61.6 149 32.2
Lsat_1_v5_gn_1_93741 Lactuca sativa HOM05D000005 ORTHO05D000012 1.5e-07 61.6 168 28.6
CAN.G1372.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.5e-07 60.8 144 30.6
Peaxi162Scf00000g00052 Petunia axillaris HOM05D000005 ORTHO05D000012 2.5e-07 60.8 155 28.4
Thecc.05G209900 Theobroma cacao HOM05D000005 ORTHO05D000012 3.3e-07 60.5 42 66.7
Lsat_1_v5_gn_1_100660 Lactuca sativa HOM05D000005 ORTHO05D000012 4.3e-07 60.1 143 30.8
Lsat_1_v5_gn_1_98921 Lactuca sativa HOM05D000005 ORTHO05D000012 4.3e-07 60.1 115 32.2
Lsat_1_v5_gn_1_94121 Lactuca sativa HOM05D000005 ORTHO05D000012 5.6e-07 59.7 152 27.6
Lsat_1_v5_gn_1_91880 Lactuca sativa HOM05D000005 ORTHO05D000012 7.3e-07 59.3 182 27.5
Lsat_1_v5_gn_1_99400 Lactuca sativa HOM05D000005 ORTHO05D000012 7.3e-07 59.3 138 28.3
CAN.G1372.2 Capsicum annuum HOM05D000005 ORTHO05D000012 1.2e-06 58.5 221 26.2
MD11G1112400 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-06 58.5 156 26.3
TWI23G0009 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.2e-06 58.5 169 28.4
Lsat_1_v5_gn_1_94101 Lactuca sativa HOM05D000005 ORTHO05D000012 1.6e-06 58.2 170 30.0
MD07G1102200 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-06 58.2 201 26.4
Lsat_1_v5_gn_5_101700 Lactuca sativa HOM05D000005 ORTHO05D000012 2.1e-06 57.8 143 31.5
Sopen01g045330 Solanum pennellii HOM05D000005 ORTHO05D000012 2.1e-06 57.8 150 23.3
Lsat_1_v5_gn_1_94701 Lactuca sativa HOM05D000005 ORTHO05D000012 2.8e-06 57.4 146 29.5
PGSC0003DMG400020722 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.8e-06 57.4 150 22.7
CSS0014375 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.6e-06 57.0 130 27.7
Lsat_1_v5_gn_1_94960 Lactuca sativa HOM05D000005 ORTHO05D000012 3.6e-06 57.0 145 28.3
Lsat_1_v5_gn_1_95060 Lactuca sativa HOM05D000005 ORTHO05D000012 3.6e-06 57.0 144 31.2
CSS0022340 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.7e-06 56.6 180 26.1
DCAR_026632 Daucus carota HOM05D000005 ORTHO05D000012 4.7e-06 56.6 138 26.8
Dinv38458 Davidia involucrata HOM05D000005 ORTHO05D000012 4.7e-06 56.6 199 24.1
MD17G1072500 Malus domestica HOM05D000005 ORTHO05D000012 4.7e-06 56.6 197 27.4
Nitab4.5_0003247g0040 Nicotiana tabacum HOM05D000005 ORTHO05D000012 6.2e-06 56.2 163 28.2
RcHm_v2.0_Chr7g0241291 Rosa chinensis HOM05D000005 ORTHO05D000012 8.1e-06 55.8 126 31.0


User provided reference genes

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