Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 0.0e+00 1239.6 699 100.0
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 9.8e-215 750.7 811 63.1
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.8e-147 527.3 717 54.0
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.5e-119 433.0 768 45.3
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 3.1e-112 410.2 762 43.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.8e-107 394.4 762 43.4
Duzib128G1713 Durio zibethinus HOM05D004299 ORTHO05D003557 1.9e-85 321.2 1022 33.0
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.2e-48 197.6 765 33.3
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 5.1e-46 190.3 775 32.6
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.1e-45 189.1 784 33.8
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 9.6e-45 186.0 769 30.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 3.1e-43 181.0 782 30.3
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.4e-42 177.6 837 30.3
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 7.6e-42 176.4 806 30.1
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 6.5e-41 173.3 258 49.6
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.1e-39 168.3 721 31.2
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.5e-37 162.2 116 77.6
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 6.2e-36 156.8 846 30.4
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.6e-34 151.4 758 28.4
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.6e-34 151.4 709 30.7
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 7.1e-32 143.3 763 28.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 9.3e-32 142.9 501 33.5
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.0e-30 139.4 304 38.8
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.8e-30 138.7 847 27.7
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.0e-30 137.9 847 27.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 3.0e-30 137.9 735 29.3
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.5e-29 135.6 309 39.2
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.3e-28 132.5 768 29.0
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.8e-28 131.3 373 36.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 4.1e-27 127.5 344 36.0
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 9.0e-27 126.3 255 40.8
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 9.0e-27 126.3 244 40.6
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 9.0e-27 126.3 785 28.4
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-26 125.9 251 40.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.4e-26 124.4 382 34.0
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-26 124.0 529 30.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.0e-25 122.9 854 25.4
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.0e-25 122.9 122 63.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.3e-25 122.5 700 29.0
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.2e-25 121.7 351 33.6
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 6.5e-25 120.2 508 30.9
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.1e-24 119.4 385 34.8
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-24 118.2 698 28.1
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 4.2e-24 117.5 678 27.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.5e-24 117.1 783 27.7
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 7.2e-24 116.7 272 37.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.4e-24 116.3 408 31.4
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.6e-23 115.5 683 26.6
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 2.1e-23 115.2 675 27.7
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.7e-23 114.8 829 26.1
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.1e-23 113.6 799 27.8
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.8e-22 112.1 736 27.7
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.3e-22 111.7 276 37.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.3e-22 111.7 738 27.8
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 3.0e-22 111.3 221 38.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 3.9e-22 110.9 452 29.9
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.7e-22 110.2 359 31.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-21 109.4 695 28.5
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.5e-21 109.0 594 26.6
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-21 109.0 579 28.0
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-21 109.0 491 29.7
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 2.5e-21 108.2 681 27.2
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 3.3e-21 107.8 683 27.5
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.7e-20 105.5 299 35.1
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.7e-20 105.5 399 31.8
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 8.2e-20 103.2 255 38.0
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 8.2e-20 103.2 766 27.0
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.1e-19 102.8 690 27.8
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.1e-19 102.8 480 28.3
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-19 102.1 682 27.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.8e-19 102.1 208 39.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 4.1e-19 100.9 402 30.6
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 4.1e-19 100.9 402 30.6
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 5.3e-19 100.5 271 34.3
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.9e-19 100.1 330 31.2
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 9.1e-19 99.8 414 30.9
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 9.1e-19 99.8 743 27.9
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.2e-18 99.4 209 40.7
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.5e-18 97.4 519 27.0
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.7e-17 95.5 251 35.9
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.7e-17 95.5 113 49.6
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.7e-17 95.5 445 33.0
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.9e-17 94.7 502 26.5
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.9e-16 92.0 721 27.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-16 92.0 517 28.4
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-16 92.0 197 37.6
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.9e-16 92.0 517 28.4
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.9e-16 92.0 197 37.6
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.5e-16 91.7 379 30.1
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 7.2e-16 90.1 245 35.9
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 7.2e-16 90.1 96 57.3
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 9.4e-16 89.7 566 29.5
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.6e-15 89.0 352 30.4
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 3.6e-15 87.8 439 32.6
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.1e-15 87.0 458 26.2
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 7.9e-15 86.7 247 37.7
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.4e-14 85.9 102 55.9
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.4e-14 85.9 196 37.2
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 2.3e-14 85.1 733 26.3
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.0e-14 84.7 712 26.1
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 3.0e-14 84.7 391 29.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-14 84.7 483 25.9
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.1e-13 82.8 312 28.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.5e-13 82.4 237 31.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 7.4e-13 80.1 342 28.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.3e-12 79.3 418 26.1
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.3e-12 79.3 767 25.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.7e-12 79.0 111 50.5
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.2e-12 78.6 305 28.9
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.8e-12 78.2 228 32.5
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.7e-12 77.8 344 29.9
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.7e-12 77.8 271 31.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.3e-12 77.0 806 25.6
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.8e-11 75.5 304 30.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.8e-11 75.5 742 25.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 7.0e-11 73.6 370 30.3
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.5e-10 72.4 114 41.2
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.5e-10 72.4 336 30.1
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.6e-10 71.6 933 24.8
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.0e-09 69.7 822 25.8
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.3e-09 69.3 740 27.4
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 3.8e-09 67.8 511 25.0
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 5.0e-09 67.4 107 43.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.0e-09 67.4 107 44.9
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 8.5e-09 66.6 778 24.9
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.1e-08 66.2 367 26.2
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.1e-08 66.2 275 29.5
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.5e-08 65.1 522 24.3
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 3.2e-08 64.7 131 35.1
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.2e-07 62.8 39 74.4
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.1e-07 62.0 697 23.4
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 2.1e-07 62.0 293 30.4
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 2.7e-07 61.6 472 24.8
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.0e-07 60.1 71 46.5
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 8.0e-07 60.1 111 44.1
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.0e-06 59.7 123 34.1
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-06 59.3 38 71.1
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-06 59.3 38 71.1
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.8e-06 58.9 475 27.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.0e-06 58.2 45 60.0
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.9e-06 57.8 692 24.9
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 3.9e-06 57.8 118 36.4
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 5.2e-06 57.4 125 37.6
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 5.2e-06 57.4 125 37.6


User provided reference genes

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