Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 2.6e-40 168.3 88 100.0
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 4.3e-35 151.0 88 89.8
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 9.6e-35 149.8 88 88.6
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 3.7e-34 147.9 88 85.2
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 1.4e-33 146.0 88 86.4
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 5.3e-33 144.1 88 83.0
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 9.0e-33 143.3 88 83.0
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 9.0e-33 143.3 88 81.8
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 3.4e-32 141.4 88 80.7
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 3.4e-32 141.4 88 80.7
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 5.8e-32 140.6 88 79.5
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 5.8e-32 140.6 88 80.7
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 7.6e-32 140.2 88 81.8
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 9.9e-32 139.8 81 91.4
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 2.9e-31 138.3 81 91.4
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 3.8e-31 137.9 88 79.5
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 4.9e-31 137.5 88 77.3
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 4.9e-31 137.5 89 78.7
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 1.1e-30 136.3 81 88.9
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 1.9e-30 135.6 87 77.0
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 3.2e-30 134.8 90 80.0
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 4.2e-30 134.4 88 76.1
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 4.2e-30 134.4 88 76.1
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 4.2e-30 134.4 84 79.8
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 75.0
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 9.3e-30 133.3 84 79.8
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 1.6e-29 132.5 88 76.1
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 2.1e-29 132.1 88 73.9
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 6.0e-29 130.6 87 79.3
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 1.3e-28 129.4 88 76.1
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 3.0e-28 128.3 89 75.3
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 3.9e-28 127.9 88 76.1
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 5.1e-28 127.5 101 67.3
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 1.5e-27 125.9 89 74.2
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 4.3e-27 124.4 81 80.2
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 9.6e-27 123.2 88 70.5
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 1.6e-26 122.5 88 68.2
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 2.1e-26 122.1 79 75.9
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 2.1e-26 122.1 81 74.1
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 2.8e-26 121.7 77 81.8
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 4.8e-26 120.9 81 74.1
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 1.4e-25 119.4 84 67.9
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 3.1e-25 118.2 84 69.0
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 3.1e-25 118.2 84 66.7
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 9.0e-25 116.7 84 66.7
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 3.4e-24 114.8 80 70.0
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 4.5e-24 114.4 103 64.1
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 7.6e-24 113.6 84 65.5
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 1.0e-23 113.2 84 65.5
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 1.0e-23 113.2 84 65.5
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 1.3e-23 112.8 84 67.9
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 2.2e-23 112.1 83 66.3
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 6.5e-23 110.5 88 61.4
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 1.1e-22 109.8 79 72.2
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 1.4e-22 109.4 84 60.7
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 1.9e-22 109.0 87 64.4
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 2.5e-22 108.6 84 59.5
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 2.5e-22 108.6 84 59.5
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 3.2e-22 108.2 85 57.6
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 1.2e-21 106.3 84 58.3
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 4.6e-21 104.4 79 65.8
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 1.0e-20 103.2 84 60.7
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 1.0e-20 103.2 69 73.9
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 1.0e-20 103.2 81 64.2
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 2.3e-20 102.1 117 53.8
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 1.1e-19 99.8 84 59.5
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 1.3e-18 96.3 86 48.8
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 6.9e-17 90.5 129 43.4
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 4.5e-16 87.8 85 56.5
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 3.2e-14 81.6 85 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1824 Anthoceros agrestis HOM05D008013 ORTHO05D010149 9.4e-14 80.1 80 51.2
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 1.0e-12 76.6 48 81.2
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 9.7e-11 70.1 49 65.3
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 1.7e-10 69.3 42 81.0
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 3.7e-10 68.2 50 70.0
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 4.8e-10 67.8 44 75.0
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 1.8e-09 65.9 50 64.0
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 2.0e-08 62.4 58 55.2
Eucgr.B01381 Eucalyptus grandis HOM05D008013 ORTHO05D010149 6.5e-07 57.4 76 44.7


User provided reference genes

Program Settings