Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G201700 Theobroma cacao HOM05D002160 ORTHO05D002012 2.3e-33 144.8 65 100.0
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.4e-11 72.4 67 58.2
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.5e-11 70.5 74 52.7
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.2e-10 69.3 80 48.8
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 4.6e-10 67.4 74 51.4
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 4.6e-10 67.4 75 53.3
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 6.1e-10 67.0 72 51.4
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.3e-09 65.9 74 51.4
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.3e-09 65.9 80 47.5
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.3e-09 65.9 74 48.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.8e-09 65.5 74 50.0
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.8e-09 65.5 79 48.1
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 2.3e-09 65.1 79 48.1
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 3.0e-09 64.7 74 51.4
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.0e-09 64.7 74 50.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.0e-09 64.7 74 47.3
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 3.0e-09 64.7 52 55.8
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.0e-09 64.7 70 54.3
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 3.9e-09 64.3 74 48.6
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 6.7e-09 63.5 74 51.4
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.7e-09 63.5 74 47.3
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 8.7e-09 63.2 77 50.6
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 8.7e-09 63.2 74 47.3
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.1e-08 62.8 74 48.6
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.1e-08 62.8 74 47.3
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.1e-08 62.8 77 46.8
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-08 62.8 74 45.9
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.5e-08 62.4 75 49.3
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.5e-08 62.4 77 51.9
MD11G1109100 Malus domestica HOM05D002160 ORTHO05D002012 1.5e-08 62.4 50 56.0
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.5e-08 62.4 74 45.9
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 1.9e-08 62.0 74 47.3
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.9e-08 62.0 74 48.6
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.9e-08 62.0 76 47.4
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.5e-08 61.6 79 44.3
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.3e-08 61.2 74 45.9
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.3e-08 61.2 78 43.6
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 3.3e-08 61.2 74 45.9
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 4.3e-08 60.8 75 49.3
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 5.7e-08 60.5 49 57.1
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 5.7e-08 60.5 74 47.3
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 7.4e-08 60.1 74 45.9
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 9.7e-08 59.7 49 61.2
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 9.7e-08 59.7 74 50.0
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.6e-07 58.9 76 50.0
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 1.6e-07 58.9 73 46.6
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.6e-07 58.9 74 45.9
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.6e-07 58.9 74 48.6
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 2.8e-07 58.2 48 62.5
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 3.7e-07 57.8 75 50.7
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 8.2e-07 56.6 74 44.6
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 8.2e-07 56.6 49 57.1
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.2e-07 56.6 79 44.3
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 1.1e-06 56.2 75 49.3
COL.COLO4_27406 Corchorus olitorius HOM05D002160 ORTHO05D159309 1.4e-06 55.8 57 61.4
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.4e-06 55.8 75 45.3
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.4e-06 55.8 74 47.3
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 1.8e-06 55.5 73 46.6
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 1.8e-06 55.5 73 46.6
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 1.8e-06 55.5 78 46.2
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.8e-06 55.5 73 43.8
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 2.4e-06 55.1 76 50.0
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 2.4e-06 55.1 76 50.0
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 2.4e-06 55.1 76 50.0
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.4e-06 55.1 76 50.0
MD11G1109200 Malus domestica HOM05D015563 ORTHO05D002012 2.4e-06 55.1 52 51.9
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.4e-06 55.1 54 53.7
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 3.1e-06 54.7 60 53.3
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.1e-06 54.7 74 45.9
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 4.1e-06 54.3 76 50.0
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 4.1e-06 54.3 76 50.0
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 4.1e-06 54.3 76 48.7
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 5.3e-06 53.9 76 47.4
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 5.3e-06 53.9 76 47.4
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 5.3e-06 53.9 76 47.4
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 5.3e-06 53.9 76 47.4
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 5.3e-06 53.9 74 41.9
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 5.3e-06 53.9 76 48.7
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 9.0e-06 53.1 49 51.0
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.0e-06 53.1 74 44.6


User provided reference genes

Program Settings