Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 0.0e+00 1276.2 625 100.0
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 0.0e+00 1139.8 615 88.9
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 0.0e+00 1085.5 617 85.9
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.2e-310 1066.6 607 84.5
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.7e-309 1064.7 607 84.2
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 5.2e-276 954.1 629 73.8
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 5.2e-276 954.1 578 77.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.7e-274 949.1 622 73.0
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 8.6e-271 936.8 606 73.3
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 5.6e-270 934.1 575 76.2
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.1e-268 929.9 611 73.5
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 4.1e-265 917.9 618 71.0
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.7e-263 912.5 619 70.1
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 6.6e-263 910.6 577 75.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.1e-262 909.8 619 69.1
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.5e-262 909.4 606 71.8
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.1e-261 905.6 616 68.3
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.0e-259 899.0 622 69.9
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 7.6e-259 897.1 613 69.8
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.2e-256 889.8 580 72.4
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.1e-256 889.0 616 67.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.9e-254 882.5 576 70.7
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.2e-253 879.8 613 68.4
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 5.2e-252 874.4 627 67.1
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 5.2e-252 874.4 576 70.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 2.0e-251 872.5 575 71.5
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.3e-250 869.8 575 69.7
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.7e-250 869.4 609 66.8
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.9e-249 865.9 622 66.7
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.5e-248 861.7 578 69.7
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.0e-247 860.1 572 69.9
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 9.6e-246 853.6 619 66.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.3e-245 853.2 575 69.2
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.8e-245 852.0 580 68.3
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 3.6e-245 851.7 606 65.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 3.1e-244 848.6 611 68.4
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.2e-243 846.7 613 66.9
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.5e-243 846.3 575 70.4
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 3.8e-242 841.6 614 66.1
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 5.4e-241 837.8 606 66.8
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 6.0e-240 834.3 577 68.5
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 3.0e-239 832.0 609 65.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 3.3e-238 828.6 572 67.0
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.8e-237 825.5 578 66.3
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.1e-236 822.0 605 64.3
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.5e-235 819.7 613 65.4
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.9e-233 812.8 626 62.0
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.5e-232 808.5 579 65.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 3.5e-232 808.5 532 72.0
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.0e-232 807.7 608 62.7
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 6.0e-232 807.7 580 67.9
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.8e-231 806.2 606 62.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.1e-230 803.5 579 64.2
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.1e-228 795.4 608 63.7
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.7e-226 789.6 612 64.1
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.7e-226 789.6 606 60.4
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.9e-226 788.1 608 63.3
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 4.9e-226 788.1 573 64.7
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.5e-225 785.8 609 61.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.5e-225 785.8 631 61.6
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.1e-224 782.7 611 63.2
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.1e-224 782.7 616 60.7
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 3.9e-223 778.5 610 62.3
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.5e-222 776.5 575 64.5
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.9e-222 776.2 579 62.9
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.9e-222 776.2 604 61.1
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 4.3e-222 775.0 579 62.9
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.1e-220 768.5 585 62.1
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.2e-219 766.9 604 62.1
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 8.5e-218 760.8 617 60.9
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.5e-217 759.2 424 84.7
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 4.2e-217 758.4 579 63.6
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 1.3e-215 753.4 603 61.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 3.3e-214 748.8 616 60.2
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 5.3e-212 741.5 624 59.3
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 2.6e-211 739.2 576 62.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 7.7e-211 737.6 614 59.0
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 2.9e-210 735.7 576 62.5
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.8e-210 735.3 576 62.3
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.0e-207 727.2 674 55.6
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 3.2e-201 705.7 589 59.8
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 2.8e-197 692.6 576 59.5
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.4e-196 689.5 614 56.2
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 7.0e-196 688.0 523 64.4
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.9e-194 682.6 552 59.1
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 6.7e-191 671.4 610 54.1
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.7e-191 671.4 610 54.4
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.0e-187 659.8 588 54.9
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.8e-186 655.6 580 56.6
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 3.2e-185 652.5 608 53.9
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 6.1e-184 648.3 509 61.3
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.8e-183 644.8 485 63.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.8e-181 639.4 580 55.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 8.3e-181 637.9 567 55.0
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.4e-180 637.1 587 54.2
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 2.5e-177 626.3 570 56.3
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 4.7e-160 568.9 522 56.3
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 5.2e-159 565.5 397 69.0
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 8.9e-159 564.7 429 64.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.5e-150 537.3 530 52.6
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.5e-150 537.3 604 48.8
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 2.6e-126 456.8 591 41.1
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.1e-120 435.3 580 39.8
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 5.8e-118 429.1 599 41.6
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 5.8e-118 429.1 611 38.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.0e-114 416.8 591 41.5
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.5e-113 414.5 633 38.9
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.5e-101 372.1 638 36.2
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.4e-95 354.0 601 35.9
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 3.4e-94 350.1 329 56.5
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.4e-87 328.2 285 60.0
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 9.1e-87 325.5 259 59.5
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-71 275.4 178 71.9
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 3.5e-62 243.8 180 68.3
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.5e-60 238.4 222 54.5
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.0e-58 232.3 170 65.9
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.3e-58 231.1 432 32.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 9.8e-57 225.7 152 68.4
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.6e-54 218.4 342 36.8
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-53 214.9 147 66.0
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.3e-36 157.5 333 33.9
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.5e-33 146.4 127 52.0
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 4.0e-26 124.0 87 63.2
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.1e-23 115.9 75 68.0
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.1e-15 89.4 400 24.5
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 9.3e-15 86.3 78 50.0
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.8e-14 83.2 78 47.4
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.5e-12 79.0 100 42.0
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 6.9e-10 70.1 101 42.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 3.4e-09 67.8 130 36.9
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.2e-07 60.8 60 58.3
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 9.3e-07 59.7 47 59.6
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.5e-06 57.8 48 60.4


User provided reference genes

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