Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G182600 Theobroma cacao HOM05D007404 ORTHO05D009281 5.8e-144 514.2 264 100.0
Duzib093G1799 Durio zibethinus HOM05D007404 ORTHO05D009281 1.6e-109 399.8 263 78.3
COL.COLO4_29466 Corchorus olitorius HOM05D007404 ORTHO05D009281 4.5e-104 381.7 265 73.6
Gorai.002G232900 Gossypium raimondii HOM05D007404 ORTHO05D009281 3.7e-82 308.9 263 65.0
Gohir.A01G199200 Gossypium hirsutum HOM05D007404 ORTHO05D009281 6.6e-79 298.1 263 63.5
QL07p025963 Quercus lobata HOM05D007404 ORTHO05D009281 3.0e-71 272.7 264 55.7
CiPaw.10G021900 Carya illinoinensis HOM05D007404 ORTHO05D009281 6.2e-69 265.0 268 54.9
Cfa020098 Carpinus fangiana HOM05D007404 ORTHO05D009281 1.0e-68 264.2 265 55.5
CiPaw.09G024800 Carya illinoinensis HOM05D007404 ORTHO05D009281 1.4e-68 263.8 268 56.3
Ciclev10012555m.g Citrus clementina HOM05D007404 ORTHO05D009281 2.2e-66 256.5 265 53.6
Haze_20093 Corylus avellana HOM05D007404 ORTHO05D009281 2.9e-66 256.1 265 54.0
Gohir.D01G189300 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.6e-64 250.4 262 56.1
Manes.08G038100 Manihot esculenta HOM05D007404 ORTHO05D009281 2.3e-63 246.5 232 55.2
Prupe.7G088400 Prunus persica HOM05D007404 ORTHO05D009281 5.0e-63 245.4 262 52.3
Atru.chr8.1254 Acer truncatum HOM05D007404 ORTHO05D009281 5.6e-62 241.9 242 54.5
TWI74G0134 Tripterygium wilfordii HOM05D007404 ORTHO05D009281 1.2e-59 234.2 265 52.5
Dinv25087 Davidia involucrata HOM05D007404 ORTHO05D009281 5.4e-57 225.3 266 48.9
MD14G1045900 Malus domestica HOM05D007404 ORTHO05D009281 7.1e-57 224.9 265 49.8
Cpa.g.sc222.4 Carica papaya HOM05D007404 ORTHO05D009281 9.2e-57 224.6 266 47.7
Actinidia03848 Actinidia chinensis HOM05D007404 ORTHO05D009281 7.8e-56 221.5 265 48.7
Glyma.19G203100 Glycine max HOM05D007404 ORTHO05D009281 2.5e-54 216.5 270 47.8
Lalb_Chr25g0287801 Lupinus albus HOM05D007404 ORTHO05D009281 2.8e-53 213.0 266 48.1
CANSAT64G1742 Cannabis sativa HOM05D007404 ORTHO05D009281 6.2e-53 211.8 266 46.2
Glyma.03G205600 Glycine max HOM05D007404 ORTHO05D009281 8.1e-53 211.5 269 46.1
VMungo1383G2609 Vigna mungo HOM05D007404 ORTHO05D009281 1.4e-52 210.7 266 46.6
Phvul.001G199200 Phaseolus vulgaris HOM05D007404 ORTHO05D009281 2.3e-52 209.9 268 47.0
Sabra06G0152600 Salix brachista HOM05D007404 ORTHO05D009281 5.8e-51 205.3 268 47.8
RcHm_v2.0_Chr3g0477561 Rosa chinensis HOM05D007404 ORTHO05D009281 1.7e-50 203.8 262 46.2
CsaV3_6G041180 Cucumis sativus L. HOM05D007404 ORTHO05D009281 2.2e-50 203.4 263 45.6
MELO3C024593.2 Cucumis melo HOM05D007404 ORTHO05D009281 2.9e-50 203.0 262 46.2
Potri.006G198500 Populus trichocarpa HOM05D007404 ORTHO05D009281 4.9e-50 202.2 270 48.9
Rhsim03G0257900 Rhododendron simsii HOM05D007404 ORTHO05D009281 6.4e-50 201.8 264 46.2
FAN05G3976 Fragaria x ananassa HOM05D007404 ORTHO05D009281 5.4e-49 198.7 260 43.8
arahy.Tifrunner.gnm1.ann1.T424Z8 Arachis hypogaea HOM05D007404 ORTHO05D009281 2.1e-48 196.8 265 43.4
FAN09G0350 Fragaria x ananassa HOM05D007404 ORTHO05D009281 3.5e-48 196.1 260 43.5
Lj1g0004547 Lotus japonicus HOM05D007404 ORTHO05D009281 7.8e-48 194.9 268 47.8
ClCG01G015070 Citrullus lanatus HOM05D007404 ORTHO05D009281 1.3e-47 194.1 269 44.2
FAN02G0840 Fragaria x ananassa HOM05D007404 ORTHO05D009281 5.1e-47 192.2 260 44.2
Medtr7g107080 Medicago truncatula HOM05D007404 ORTHO05D009281 5.1e-47 192.2 232 46.1
Ca_09089_v3 Cicer arietinum L. HOM05D007404 ORTHO05D009281 6.6e-47 191.8 229 47.2
FvH4_6g21130 Fragaria vesca HOM05D007404 ORTHO05D009281 1.5e-46 190.7 260 43.5
FAN14G5090 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.5e-46 189.9 260 43.1
Sed0004973 Sechium edule HOM05D007404 ORTHO05D009281 2.5e-46 189.9 255 45.1
vmacro06064 Vaccinium macrocarpon HOM05D007404 ORTHO05D009281 4.3e-46 189.1 228 48.2
Eucgr.A02534 Eucalyptus grandis HOM05D007404 ORTHO05D009281 7.3e-46 188.3 258 42.2
Cc06_g07050 Coffea canephora HOM05D007404 ORTHO05D009281 1.2e-45 187.6 265 43.8
Actinidia03958 Actinidia chinensis HOM05D007404 ORTHO05D009281 3.6e-45 186.0 205 50.7
Psat3g026720 Pisum sativum HOM05D007404 ORTHO05D009281 3.6e-45 186.0 233 46.4
Hma1.2p1_0304F.1_g119261 Hydrangea macrophylla HOM05D007404 ORTHO05D009281 6.2e-45 185.3 234 45.7
TPR.G14403 Trifolium pratense HOM05D007404 ORTHO05D009281 5.8e-43 178.7 231 45.5
DCAR_013466 Daucus carota HOM05D007404 ORTHO05D009281 9.9e-43 177.9 232 47.0
MSTRG.19336 Avicennia marina HOM05D007404 ORTHO05D009281 1.2e-40 171.0 279 39.1
Lj1C1059T6 Lonicera japonica HOM05D007404 ORTHO05D009281 7.8e-40 168.3 273 42.1
Nitab4.5_0000117g0060 Nicotiana tabacum HOM05D007404 ORTHO05D009281 1.3e-39 167.5 265 40.4
Nitab4.5_0012268g0010 Nicotiana tabacum HOM05D007404 ORTHO05D009281 3.9e-39 166.0 261 39.1
Oeu063091.1 Olea europaea HOM05D007404 ORTHO05D009281 3.6e-37 159.5 268 42.9
AUR62038411 Chenopodium quinoa HOM05D007404 ORTHO05D009281 1.8e-36 157.1 250 39.6
Peaxi162Scf00211g00002 Petunia axillaris HOM05D007404 ORTHO05D009281 1.8e-36 157.1 265 38.9
Aqoxy1G00574 Aquilegia oxysepala HOM05D007404 ORTHO05D009281 3.1e-36 156.4 253 41.1
TAR623G1670 Trochodendron aralioides HOM05D007404 ORTHO05D009281 5.3e-36 155.6 264 42.0
THA.LOC104826786 Tarenaya hassleriana HOM05D007404 ORTHO05D009281 6.9e-36 155.2 277 39.4
PGSC0003DMG400022875 Solanum tuberosum HOM05D007404 ORTHO05D009281 9.0e-36 154.8 261 38.3
Nn2g14440 Nelumbo nucifera HOM05D007404 ORTHO05D009281 1.2e-35 154.5 292 37.7
Solyc11g045270.3 Solanum lycopersicum HOM05D007404 ORTHO05D009281 1.2e-35 154.5 257 38.1
Nn2g14441 Nelumbo nucifera HOM05D007404 ORTHO05D009281 2.6e-35 153.3 287 36.9
Migut.J00747 Erythranthe guttata HOM05D007404 ORTHO05D009281 3.4e-35 152.9 270 38.9
Sopen11g020730 Solanum pennellii HOM05D007404 ORTHO05D009281 2.2e-34 150.2 257 37.7
PGR004G0377 Punica granatum HOM05D007404 ORTHO05D009281 6.4e-34 148.7 260 41.5
AUR62036300 Chenopodium quinoa HOM05D007404 ORTHO05D009281 8.4e-34 148.3 272 37.1
CAN.G13.10 Capsicum annuum HOM05D007404 ORTHO05D009281 1.9e-33 147.1 261 36.0
ECA238G2201 Erigeron canadensis HOM05D007404 ORTHO05D009281 5.4e-33 145.6 232 38.8
Sc07g0007250 Simmondsia chinensis HOM05D007404 ORTHO05D009281 1.6e-32 144.1 288 36.5
Dinv11908 Davidia involucrata HOM05D007404 ORTHO05D009281 2.1e-32 143.7 213 42.3
EL10Ac5g11794 Beta vulgaris HOM05D007404 ORTHO05D009281 1.3e-31 141.0 265 38.1
Lsat_1_v5_gn_2_102100 Lactuca sativa HOM05D007404 ORTHO05D009281 3.0e-31 139.8 218 41.7
Hund10780 Selenicereus undatus HOM05D007404 ORTHO05D009281 3.0e-31 139.8 267 36.3
Ah.02g113930 Amaranthus hybridus HOM05D007404 ORTHO05D009281 6.6e-31 138.7 271 36.5
MBI14_g28309_MAGBIO Magnolia biondii HOM05D007404 ORTHO05D009281 5.6e-30 135.6 310 35.8
SGA_v2.0_scaffold112G31676 Striga asiatica HOM05D007404 ORTHO05D009281 1.6e-29 134.0 226 36.7
unitig_26.g9157 Utricularia gibba HOM05D000495 ORTHO05D009281 9.9e-27 124.8 223 36.3
HanXRQChr14g0453181 Helianthus annuus HOM05D007404 ORTHO05D009281 1.4e-25 120.9 91 63.7
ATR0686G215 Amborella trichopoda HOM05D007404 ORTHO05D009281 2.4e-25 120.2 316 30.4
Carub.0003s1121 Capsella rubella HOM05D007404 ORTHO05D009281 4.3e-22 109.4 141 46.1
Aa31LG3G5700 Aethionema arabicum HOM05D007404 ORTHO05D009281 5.6e-22 109.0 126 47.6
AT3G11890 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 1.3e-21 107.8 141 46.1
Sp3g10090 Schrenkiella parvula HOM05D007404 ORTHO05D009281 3.7e-21 106.3 137 44.5
BcaC05g29316 Brassica carinata HOM05D007404 ORTHO05D009281 6.2e-21 105.5 106 53.8
A05p37490 Brassica napus HOM05D007404 ORTHO05D009281 6.2e-21 105.5 106 53.8
C05p56050 Brassica napus HOM05D007404 ORTHO05D009281 6.2e-21 105.5 106 53.8
BolC5t34272H Brassica oleracea HOM05D007404 ORTHO05D009281 6.2e-21 105.5 106 53.8
BraA05t22547Z Brassica rapa HOM05D007404 ORTHO05D009281 6.2e-21 105.5 106 53.8
CARHR086420 Cardamine hirsuta HOM05D007404 ORTHO05D009281 6.2e-21 105.5 113 52.2
Thhalv10020684m.g Eutrema salsugineum HOM05D007404 ORTHO05D009281 8.1e-21 105.1 137 46.0
BcaB06g25568 Brassica carinata HOM05D007404 ORTHO05D009281 1.1e-20 104.8 105 53.3
Zm00001eb170760 Zea mays HOM05D007404 ORTHO05D009281 1.2e-19 101.3 232 32.8
SEGI_39351 Sequoiadendron giganteum HOM05D007404 ORTHO05D009281 2.6e-19 100.1 87 57.5
Os08g0378800 Oryza sativa ssp. japonica HOM05D007404 ORTHO05D009281 2.2e-18 97.1 183 32.2
HPP92_023288 Vanilla planifolia HOM05D007404 ORTHO05D009281 7.1e-17 92.0 80 51.2
CDE09G0274 Ceratophyllum demersum HOM05D007404 ORTHO05D009281 1.6e-16 90.9 238 30.7
GSVIVG01022504001 Vitis vinifera HOM05D007404 ORTHO05D009281 6.7e-15 85.5 102 48.0
Mapoly0022s0106 Marchantia polymorpha HOM05D007404 ORTHO05D009281 1.2e-11 74.7 85 38.8
AagrBONN_evm.TU.Sc2ySwM_340.357 Anthoceros agrestis HOM05D007404 ORTHO05D009281 7.9e-08 62.0 67 44.8
CBR_g31169 Chara braunii HOM05D002304 ORTHO05D002363 1.3e-07 61.2 61 45.9
Aqoxy5G03199 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 1.5e-06 57.8 67 44.8
Cc04_g08240 Coffea canephora HOM05D002304 ORTHO05D002363 4.3e-06 56.2 54 48.1
PSO017G5758 Papaver somniferum HOM05D002304 ORTHO05D002363 4.3e-06 56.2 65 41.5
PSO478G2317 Papaver somniferum HOM05D002304 ORTHO05D002363 4.3e-06 56.2 65 41.5
Aqoxy5G03200 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 7.4e-06 55.5 67 44.8
QL10p020791 Quercus lobata HOM05D002304 ORTHO05D002363 7.4e-06 55.5 54 44.4
FAN14G2589 Fragaria x ananassa HOM05D007404 ORTHO05D009281 9.7e-06 55.1 165 32.7
Gohir.A03G055000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 9.7e-06 55.1 61 44.3
Gohir.D03G111900 Gossypium hirsutum HOM05D002304 ORTHO05D002363 9.7e-06 55.1 61 44.3
Gorai.003G118200 Gossypium raimondii HOM05D002304 ORTHO05D002363 9.7e-06 55.1 61 44.3


User provided reference genes

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