Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 6.5e-188 660.6 340 100.0
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.0e-173 612.5 340 91.8
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.7e-164 582.8 340 86.5
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.1e-158 562.0 340 83.5
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.5e-157 558.5 340 82.6
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.5e-157 558.1 340 82.6
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.5e-156 554.3 340 81.8
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.5e-155 553.1 340 81.5
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.0e-153 547.0 335 81.8
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.3e-151 540.0 323 84.5
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-150 535.8 333 81.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 8.0e-146 520.8 313 85.3
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.7e-141 505.8 350 76.9
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 3.3e-139 498.8 341 75.7
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 9.5e-139 497.3 350 74.6
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.8e-138 495.7 350 73.7
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.4e-137 493.4 296 83.8
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.0e-136 489.6 326 75.2
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 2.0e-136 489.6 303 80.5
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 3.4e-136 488.8 302 81.5
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 3.4e-136 488.8 343 73.8
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 7.5e-136 487.6 296 82.4
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 9.8e-136 487.3 343 73.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.3e-135 486.9 315 78.4
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.7e-135 486.5 341 73.9
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 2.2e-135 486.1 341 74.2
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 2.9e-135 485.7 341 73.3
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.7e-135 485.3 340 73.2
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 4.9e-135 485.0 332 73.5
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.4e-134 483.4 341 72.4
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 5.4e-134 481.5 295 81.7
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.0e-134 481.1 343 72.6
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 7.0e-134 481.1 322 75.2
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 7.0e-134 481.1 351 70.7
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 9.2e-134 480.7 276 84.1
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.0e-133 479.6 316 74.7
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.0e-132 477.2 309 77.0
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.3e-132 476.9 308 76.3
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.7e-132 476.5 303 78.2
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 1.7e-132 476.5 308 76.3
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.0e-132 475.7 306 77.1
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 5.0e-132 474.9 300 78.7
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 6.6e-132 474.6 306 77.1
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 6.6e-132 474.6 329 72.9
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 6.6e-132 474.6 329 72.9
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 6.6e-132 474.6 300 78.7
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 8.6e-132 474.2 306 77.5
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 8.6e-132 474.2 296 80.1
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 8.6e-132 474.2 303 77.6
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.1e-131 473.8 299 77.9
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.1e-131 473.8 319 74.9
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 1.5e-131 473.4 330 73.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.5e-131 473.4 296 78.7
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.5e-131 473.4 304 78.0
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.5e-131 473.4 306 76.5
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.9e-131 473.0 305 77.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.9e-131 473.0 289 81.3
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.5e-131 472.6 326 73.0
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 4.3e-131 471.9 317 73.8
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 7.3e-131 471.1 343 71.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 9.5e-131 470.7 319 74.0
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.2e-130 470.3 317 73.2
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.2e-130 470.3 341 71.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.6e-130 469.9 304 75.7
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.6e-130 469.9 298 78.2
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.1e-130 469.5 282 81.2
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.1e-130 469.5 304 77.3
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.8e-130 469.2 342 71.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 3.6e-130 468.8 300 77.0
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.7e-130 468.4 319 73.7
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 6.2e-130 468.0 344 70.3
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 8.0e-130 467.6 308 75.3
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.3e-129 466.1 325 72.9
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 2.3e-129 466.1 290 79.7
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 2.3e-129 466.1 326 73.3
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 4.0e-129 465.3 276 80.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.0e-129 465.3 343 70.0
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 5.2e-129 464.9 343 70.8
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-128 463.8 341 70.1
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 1.2e-128 463.8 336 72.3
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.0e-128 463.0 348 70.1
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 2.6e-128 462.6 300 77.0
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.4e-128 461.8 343 70.6
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 5.8e-128 461.5 296 78.0
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 7.5e-128 461.1 288 78.5
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.7e-127 459.9 300 76.3
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 2.2e-127 459.5 279 79.9
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 2.2e-127 459.5 296 76.4
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.2e-127 459.5 334 69.8
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 2.2e-127 459.5 289 78.9
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 4.9e-127 458.4 296 76.0
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 4.9e-127 458.4 318 75.2
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 4.9e-127 458.4 301 76.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 6.4e-127 458.0 274 81.4
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 6.4e-127 458.0 343 67.9
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 8.3e-127 457.6 299 76.9
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.9e-126 456.4 298 75.8
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.4e-126 456.1 280 81.1
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 3.2e-126 455.7 299 75.3
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 5.4e-126 454.9 277 80.9
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.2e-125 453.8 272 81.2
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.6e-125 453.4 276 80.4
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.6e-125 453.4 276 79.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.5e-125 452.2 275 80.0
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 7.8e-125 451.1 303 72.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.5e-123 446.8 301 74.4
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.9e-123 446.4 342 68.1
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-122 443.4 274 79.2
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.1e-122 443.0 322 70.2
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 6.2e-122 441.4 301 73.8
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.3e-121 439.5 293 74.4
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 3.1e-121 439.1 302 71.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 8.9e-121 437.6 276 76.1
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.2e-120 437.2 277 75.5
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.6e-120 436.0 302 72.5
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 2.6e-120 436.0 318 70.4
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.6e-120 436.0 265 80.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 5.8e-120 434.9 272 76.8
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.3e-119 431.0 290 74.5
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.6e-117 426.8 280 75.7
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.5e-117 425.6 281 73.3
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.0e-116 424.1 343 65.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 3.0e-116 422.5 337 66.5
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.5e-115 420.2 318 67.9
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 4.3e-115 418.7 335 64.2
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.3e-115 418.7 278 72.7
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 9.6e-115 417.5 297 72.1
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.2e-114 417.2 332 65.4
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.1e-114 416.4 312 69.2
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 2.9e-111 406.0 294 70.7
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.1e-110 404.1 306 68.3
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.2e-109 400.6 300 69.0
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 3.5e-109 399.1 252 77.0
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.3e-108 396.4 304 68.4
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.7e-108 394.4 309 62.1
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 9.0e-105 384.4 289 63.7
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 5.6e-99 365.2 224 78.1
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 9.0e-97 357.8 277 61.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 6.4e-95 351.7 304 56.6
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 6.4e-95 351.7 276 62.7
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 2.1e-90 336.7 186 88.2
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 6.9e-89 331.6 253 68.4
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 8.2e-82 308.1 282 57.4
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.1e-81 307.8 216 73.6
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 7.6e-80 301.6 278 53.6
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.8e-79 299.3 183 80.3
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 7.1e-78 295.0 289 55.0
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.2e-77 294.3 274 50.0
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-73 281.2 239 66.5
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.0e-68 264.6 218 66.1
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.7e-66 257.3 174 77.0
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.1e-65 252.7 220 65.5
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.7e-58 230.7 312 46.2
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 8.2e-58 228.4 173 68.8
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.7e-55 220.7 253 52.6
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 3.1e-49 199.9 177 60.5
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 5.9e-48 195.7 190 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.6e-43 180.3 181 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.7e-37 160.2 138 60.9
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 1.8e-36 157.5 90 82.2
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.6e-32 144.4 278 32.7
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 5.9e-32 142.5 77 87.0
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.7e-26 123.2 75 81.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 6.4e-26 122.5 68 88.2
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 8.3e-26 122.1 152 49.3
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.1e-25 121.7 89 66.3
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.0e-23 113.6 164 42.7
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.6e-21 106.7 66 84.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.6e-16 89.7 83 55.4
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.5e-11 74.7 181 30.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.3e-10 71.6 81 49.4
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 4.3e-06 56.6 59 47.5
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.6e-06 56.2 39 79.5


User provided reference genes

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