Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 4.2e-110 401.4 201 100.0
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.1e-97 358.6 202 90.6
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 7.2e-94 347.4 202 87.1
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.7e-88 327.4 205 83.4
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.8e-84 313.9 203 81.8
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.4e-83 310.8 202 82.2
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-82 310.1 202 82.2
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-82 309.7 203 80.8
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.4e-81 306.6 202 81.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.8e-74 281.6 206 72.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.1e-73 277.3 206 71.4
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.2e-72 276.9 206 71.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.2e-66 256.1 198 66.2
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.4e-65 251.5 200 66.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 5.9e-64 248.1 199 63.8
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.8e-63 245.4 199 66.8
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.8e-63 245.4 198 64.6
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.9e-62 243.0 192 69.8
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.9e-62 243.0 183 71.0
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.0e-60 237.3 209 66.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.0e-60 235.7 207 61.8
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 6.8e-60 234.6 198 62.6
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 7.5e-59 231.1 205 62.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.8e-59 230.7 214 62.6
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 9.8e-59 230.7 216 62.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.7e-58 229.9 215 63.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.9e-58 228.4 190 61.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.3e-58 228.0 214 62.1
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.3e-58 228.0 214 61.7
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.1e-57 227.3 209 62.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.1e-57 227.3 214 61.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-57 227.3 214 61.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-57 227.3 214 61.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.8e-57 226.5 215 66.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.5e-56 222.2 200 60.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.3e-55 220.3 193 60.6
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.8e-55 218.8 190 66.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.5e-54 214.2 202 58.4
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.6e-53 213.4 204 58.3
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.3e-52 209.5 185 62.2
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 3.1e-52 209.1 203 55.2
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 4.9e-50 201.8 205 55.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.2e-49 199.1 182 62.6
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 6.0e-48 194.9 222 53.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.0e-47 191.8 205 54.6
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 8.6e-47 191.0 204 54.4
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 3.3e-46 189.1 206 52.9
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.6e-46 188.3 195 55.9
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 9.5e-46 187.6 179 56.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-45 186.8 214 51.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-45 186.4 177 58.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.1e-45 186.4 203 53.2
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.8e-45 186.0 215 51.6
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 6.2e-45 184.9 216 51.4
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 6.2e-45 184.9 206 53.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 8.0e-45 184.5 201 54.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-44 184.1 204 54.9
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.1e-44 184.1 196 52.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.1e-44 182.6 190 52.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.1e-44 182.6 219 49.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.0e-44 182.2 200 51.5
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 4.0e-44 182.2 201 56.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 6.8e-44 181.4 205 53.2
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 8.9e-44 181.0 180 56.7
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 8.9e-44 181.0 199 55.8
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.4e-43 179.1 207 51.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.4e-43 179.1 219 48.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.7e-42 176.8 224 46.4
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.7e-42 176.8 211 50.7
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.7e-42 176.8 206 51.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.9e-42 176.0 210 50.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.1e-41 174.1 212 50.5
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.1e-41 174.1 178 52.8
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.1e-41 174.1 203 53.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 5.4e-41 171.8 185 54.6
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-40 169.9 189 55.0
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.1e-40 169.9 219 49.8
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.7e-40 169.5 201 48.3
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.5e-40 169.1 184 52.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.8e-40 167.9 203 50.2
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.3e-39 166.4 233 48.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.3e-39 166.4 219 48.9
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.3e-39 166.4 181 54.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 5.1e-39 165.2 206 50.5
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 6.6e-39 164.9 210 51.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.6e-39 164.5 132 67.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.5e-38 162.9 187 52.9
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.5e-38 162.9 216 48.1
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.3e-38 162.5 195 49.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.2e-37 160.6 220 47.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.2e-37 160.6 207 50.7
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.8e-37 159.5 193 51.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 4.7e-37 158.7 199 49.2
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 6.2e-37 158.3 184 48.9
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 8.1e-37 157.9 221 48.4
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.8e-36 156.8 201 48.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 8.9e-36 154.5 202 47.0
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-35 154.1 193 50.3
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.6e-35 152.9 189 49.7
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.4e-35 152.5 204 47.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.8e-35 151.8 199 49.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.5e-35 151.4 210 47.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 9.9e-35 151.0 209 48.8
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.9e-35 151.0 211 46.9
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.7e-34 150.2 190 48.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.7e-34 150.2 206 45.6
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-34 149.8 185 49.7
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.9e-34 149.4 185 49.7
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.7e-34 149.1 218 45.9
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.7e-34 149.1 206 49.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 6.4e-34 148.3 194 47.9
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-33 147.5 120 66.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.1e-33 147.5 126 65.1
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.4e-33 147.1 217 46.1
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.6e-32 143.7 188 48.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.6e-32 143.7 156 52.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-32 142.9 187 46.0
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.7e-32 142.9 188 47.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.5e-32 142.5 152 53.9
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.5e-32 142.5 186 45.7
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.5e-32 142.5 111 64.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.5e-32 142.5 188 45.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.0e-32 141.7 185 45.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.0e-31 141.0 195 46.2
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-31 140.2 179 46.9
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-31 139.8 185 45.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.0e-31 139.4 178 48.3
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 3.0e-31 139.4 178 48.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.0e-31 139.4 202 48.5
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.0e-31 139.4 202 48.5
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.9e-31 139.0 186 47.8
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.9e-31 139.0 209 44.5
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-31 137.9 197 46.2
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 8.6e-31 137.9 197 46.2
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.6e-31 137.9 195 44.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-30 137.5 198 46.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-30 136.7 179 44.7
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.5e-30 136.3 196 44.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.3e-30 135.6 158 47.5
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.6e-29 133.7 148 50.0
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.6e-29 133.7 168 49.4
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-29 133.3 190 44.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.1e-29 133.3 187 45.5
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.8e-29 132.9 186 44.1
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.7e-29 132.1 180 46.1
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 6.2e-29 131.7 182 47.3
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.4e-28 130.6 181 44.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.4e-28 129.8 191 46.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.1e-28 129.4 186 46.8
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-28 129.0 174 46.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-27 126.7 179 43.0
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.4e-27 125.9 194 42.8
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.8e-27 125.2 208 47.1
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 7.6e-27 124.8 173 44.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.7e-26 123.6 139 50.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.2e-26 123.2 185 42.7
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.9e-26 122.9 152 46.7
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.2e-25 119.4 188 45.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 4.2e-25 119.0 177 45.8
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 5.4e-25 118.6 138 48.6
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 7.1e-25 118.2 176 40.3
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.6e-24 115.5 171 45.6
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.3e-23 113.2 165 40.6
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.0e-23 112.8 201 42.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.5e-22 109.8 165 38.8
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-21 107.1 113 52.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-21 106.7 187 40.6
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.1e-20 104.4 127 52.8
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.4e-20 103.2 195 40.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.5e-19 100.5 187 40.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 7.6e-19 98.2 186 41.9
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-18 97.4 186 41.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-18 97.4 186 41.4
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-18 97.4 194 40.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-18 97.1 186 41.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-18 96.3 186 40.9
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.8e-18 95.9 189 40.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.4e-17 92.0 128 46.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.4e-17 92.0 281 32.4
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.0e-15 86.3 136 44.9
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.2e-13 78.6 88 48.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 2.4e-12 76.6 203 32.5
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 3.4e-11 72.8 150 36.0
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.2e-09 66.2 74 50.0
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.3e-07 60.8 139 39.6


User provided reference genes

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