Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 8.3e-85 317.0 160 100.0
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.6e-78 295.4 160 93.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 9.8e-78 293.5 157 92.4
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 6.3e-77 290.8 160 91.9
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.1e-76 290.0 160 88.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.4e-76 289.7 160 91.2
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.4e-76 289.7 155 91.0
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-76 289.3 154 91.6
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.8e-76 289.3 154 91.6
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.0e-75 285.8 160 87.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.3e-74 282.3 157 87.9
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 2.3e-74 282.3 160 85.0
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.0e-74 281.2 160 85.6
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.0e-74 281.2 160 85.6
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.1e-73 280.0 160 85.0
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.9e-73 279.3 160 85.0
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 4.3e-73 278.1 160 83.8
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.6e-73 277.7 156 86.5
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 7.3e-73 277.3 160 82.5
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.6e-72 275.0 158 82.9
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 4.7e-72 274.6 154 86.4
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.0e-71 273.5 158 82.3
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.0e-71 273.5 160 82.5
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.4e-71 273.1 159 82.4
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 86.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.1
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.1
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.1
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.1
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.1
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.1
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 2.3e-71 272.3 160 83.8
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.1e-71 271.9 158 81.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.1e-71 271.9 160 82.5
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 6.8e-71 270.8 160 82.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.2e-70 270.0 160 80.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.5e-70 269.6 158 81.6
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.6e-70 268.9 160 82.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.6e-70 268.9 158 81.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.4e-70 268.5 158 81.6
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 3.4e-70 268.5 160 79.4
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 4.4e-70 268.1 157 82.8
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 5.8e-70 267.7 158 81.0
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.7e-69 265.0 158 81.0
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 3.7e-69 265.0 155 80.6
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.7e-69 265.0 157 81.5
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.7e-69 265.0 158 78.5
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 4.9e-69 264.6 160 79.4
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 6.4e-69 264.2 157 81.5
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 2.4e-68 262.3 160 78.8
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.4e-68 262.3 141 91.5
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 3.2e-68 261.9 154 83.1
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 3.2e-68 261.9 156 80.8
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.2e-68 261.9 157 80.3
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 5.4e-68 261.2 157 80.9
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.2e-67 260.0 155 78.7
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.6e-67 259.6 154 82.5
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.6e-67 259.6 160 77.5
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.0e-67 259.2 154 79.9
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.0e-67 259.2 154 79.2
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.5e-67 258.5 157 79.0
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 4.6e-67 258.1 158 78.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 4.6e-67 258.1 158 76.6
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 6.0e-67 257.7 157 77.7
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 6.0e-67 257.7 157 77.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 157 76.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.3e-66 255.8 155 77.4
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.9e-66 255.0 155 81.3
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.0e-66 254.6 160 75.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.0e-66 254.6 160 75.6
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 6.6e-66 254.2 158 77.8
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.8
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 156 78.2
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 156 78.2
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 157 75.8
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.5e-65 253.1 160 77.5
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.9e-65 252.7 160 75.6
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.9e-65 252.7 155 76.8
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.9e-65 252.7 157 79.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 5.6e-65 251.1 160 74.4
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 7.3e-65 250.8 160 74.4
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 9.5e-65 250.4 160 75.6
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 9.5e-65 250.4 209 63.6
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 160 74.4
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 75.0
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 74.4
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 75.0
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.1e-64 249.2 160 77.5
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.8e-64 248.8 160 73.8
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 8.0e-64 247.3 160 73.8
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.4e-63 246.5 160 75.0
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.8e-63 246.1 158 71.5
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 3.1e-63 245.4 156 76.3
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 4.0e-63 245.0 159 74.8
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 4.0e-63 245.0 159 74.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 5.2e-63 244.6 160 75.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 8.9e-63 243.8 161 73.3
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 8.9e-63 243.8 161 73.3
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 8.9e-63 243.8 161 73.3
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 8.9e-63 243.8 161 73.3
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 8.9e-63 243.8 161 73.3
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 8.9e-63 243.8 158 73.4
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.2e-62 243.4 156 72.4
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.4e-62 241.9 161 72.7
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 5.8e-62 241.1 155 74.2
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.7e-61 239.6 161 72.0
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.7e-61 239.6 161 72.0
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.7e-61 239.6 161 72.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-61 239.2 150 74.7
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 4.9e-61 238.0 150 74.0
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.6e-59 233.0 144 79.2
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.7e-58 229.6 156 69.9
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 5.1e-58 228.0 135 81.5
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.6e-58 227.3 143 75.5
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.5e-57 226.5 244 53.3
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.6e-56 221.9 161 67.7
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.1e-55 220.3 125 83.2
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.4e-55 219.9 145 71.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 5.2e-55 218.0 123 85.4
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.9e-53 212.2 208 54.3
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.7e-53 211.8 145 67.6
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.4e-52 209.9 162 63.0
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 2.7e-51 205.7 301 43.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.6e-48 196.4 188 54.8
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.4e-47 192.6 112 78.6
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 6.8e-47 191.0 158 58.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 7.6e-46 187.6 109 80.7
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 7.1e-44 181.0 144 65.3
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 6.9e-39 164.5 98 85.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 4.9e-37 158.3 113 72.6
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 7.8e-35 151.0 101 74.3
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 3.9e-34 148.7 133 56.4
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 8.1e-32 141.0 154 48.1
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.7e-29 133.3 149 46.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.9e-29 132.5 149 45.6
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.4e-29 131.3 132 53.0
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-28 129.0 77 76.6
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 1.2e-27 127.1 146 53.4
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.1e-26 121.7 152 41.4
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 5.1e-26 121.7 150 43.3
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-24 115.5 87 65.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.0e-23 112.1 80 68.8
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.0e-23 112.1 80 68.8
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 65 78.5
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 2.0e-22 109.8 138 42.8
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-22 109.4 65 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 5.8e-22 108.2 137 42.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 4.9e-21 105.1 64 76.6
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.1e-20 101.3 64 73.4
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 2.1e-19 99.8 101 57.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 7.9e-19 97.8 78 61.5
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 5.1e-10 68.6 53 64.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-09 67.0 53 62.3
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 1.9e-09 66.6 146 34.9
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 5.3e-07 58.5 49 65.3
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 2.6e-06 56.2 122 30.3


User provided reference genes

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