Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 9.9e-133 476.9 254 100.0
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.9e-107 392.9 256 83.6
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 5.5e-107 391.3 256 82.4
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 8.5e-100 367.5 254 80.7
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.2e-93 347.1 260 76.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 8.5e-92 340.9 260 76.2
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 8.5e-92 340.9 260 75.8
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.8e-71 272.7 263 65.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.6e-60 234.6 265 57.7
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.3e-59 232.3 265 55.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 7.3e-59 231.5 262 56.1
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.5e-59 231.1 266 55.6
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.6e-58 230.3 260 56.5
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 2.1e-58 229.9 264 55.7
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.4e-57 227.3 262 56.5
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.8e-57 226.9 270 55.9
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.3e-57 226.5 261 55.2
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.0e-57 226.1 262 55.7
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.0e-57 226.1 267 55.1
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 4.0e-57 225.7 261 55.6
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 6.8e-57 224.9 267 56.6
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 7.5e-56 221.5 263 55.1
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.3e-55 220.7 279 53.4
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.7e-55 220.3 264 55.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.2e-55 219.9 270 55.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.4e-54 217.2 263 55.1
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.8e-54 216.9 264 50.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 4.1e-54 215.7 267 53.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.4e-54 215.3 265 54.3
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.4e-54 215.3 263 55.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.6e-53 213.8 258 54.3
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.6e-53 213.8 262 55.0
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.0e-53 213.4 263 55.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.0e-53 213.4 269 53.9
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.5e-53 212.6 263 54.4
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.0e-52 209.5 265 53.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.0e-52 209.5 264 53.4
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.9e-52 209.1 257 52.9
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-51 207.6 262 54.2
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.5e-51 207.2 289 50.2
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.9e-51 206.8 257 52.5
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.3e-51 206.1 279 50.2
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 7.3e-51 204.9 261 52.1
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 7.3e-51 204.9 266 50.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 9.5e-51 204.5 268 51.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.6e-50 203.8 257 52.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-50 203.8 257 52.9
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.8e-50 203.0 293 50.5
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.0e-49 201.1 263 51.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.8e-49 200.3 257 51.0
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 6.8e-49 198.4 258 52.3
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.9e-49 198.0 257 51.8
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.9e-49 198.0 257 51.8
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.5e-48 197.2 265 52.5
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.0e-48 196.8 264 51.1
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.4e-48 196.1 250 54.8
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-47 194.1 254 51.6
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.2e-47 193.4 265 52.1
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.9e-47 193.0 265 52.5
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.9e-47 193.0 266 52.3
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-47 192.6 256 51.6
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.7e-47 192.6 256 51.6
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 4.9e-47 192.2 265 51.7
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.4e-46 190.7 268 50.0
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.4e-46 189.9 263 49.8
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 3.2e-46 189.5 255 48.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 4.1e-46 189.1 259 51.4
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 7.0e-46 188.3 267 51.3
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.2e-45 187.6 176 63.6
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.2e-45 187.6 259 50.6
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.6e-45 187.2 259 52.1
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 2.0e-45 186.8 259 51.0
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.0e-45 186.8 262 51.1
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 3.5e-45 186.0 258 48.8
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.5e-45 186.0 262 50.4
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 7.8e-45 184.9 263 49.8
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.3e-44 184.1 269 47.2
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.7e-44 183.7 264 50.8
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.3e-44 183.3 266 50.0
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 3.0e-44 183.0 262 51.1
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 6.6e-44 181.8 274 47.8
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 8.6e-44 181.4 315 47.0
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.1e-43 181.0 274 46.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.1e-43 181.0 262 46.6
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.3e-43 179.1 264 49.2
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.1e-42 176.8 272 45.6
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.6e-42 176.0 265 50.2
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 4.7e-42 175.6 260 48.8
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.1e-41 172.9 263 47.1
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 3.1e-41 172.9 202 53.5
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 6.8e-41 171.8 271 47.6
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 5.8e-40 168.7 270 47.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.9e-39 166.4 259 48.6
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 3.7e-39 166.0 242 48.3
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 8.3e-39 164.9 265 47.2
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.1e-38 164.5 262 45.8
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.9e-38 163.7 259 46.7
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.9e-38 163.7 259 46.7
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 3.2e-38 162.9 263 44.5
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 4.1e-38 162.5 260 48.5
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 4.1e-38 162.5 260 48.5
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 4.1e-38 162.5 217 50.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.4e-38 162.2 259 46.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 7.1e-38 161.8 265 44.5
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.1e-38 161.8 243 52.7
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.2e-37 161.0 266 46.6
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.7e-37 159.8 258 46.1
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.7e-37 159.8 260 46.9
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.7e-37 159.8 269 46.5
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 6.0e-37 158.7 260 47.3
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 7.8e-37 158.3 262 46.2
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-36 157.5 263 46.4
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 3.9e-36 156.0 261 45.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 5.1e-36 155.6 260 45.8
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 6.6e-36 155.2 280 42.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.1e-35 154.5 250 50.4
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 3.3e-35 152.9 263 43.0
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.3e-35 152.5 263 45.2
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 5.6e-35 152.1 271 43.5
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-34 151.0 157 59.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 3.6e-34 149.4 275 47.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 8.1e-34 148.3 264 45.5
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.4e-33 147.5 160 56.9
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.4e-33 147.5 285 42.5
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 1.8e-33 147.1 286 42.7
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 8.9e-33 144.8 265 42.6
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.5e-32 144.1 264 45.8
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 2.0e-32 143.7 253 41.1
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.0e-32 143.7 262 44.3
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.6e-32 143.3 174 54.6
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.4e-32 142.9 267 41.6
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.4e-32 142.5 259 44.4
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 4.4e-32 142.5 259 44.8
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.8e-32 142.1 175 53.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 7.6e-32 141.7 257 42.4
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.7e-31 140.6 262 44.3
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 2.9e-31 139.8 256 44.5
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.9e-31 139.8 260 44.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.1e-30 137.9 265 40.8
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.1e-30 136.0 273 39.6
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 9.2e-30 134.8 210 44.8
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.1e-29 133.7 188 52.7
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 4.6e-29 132.5 226 45.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.3e-28 131.0 189 49.7
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.3e-28 131.0 267 39.3
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.1e-28 129.0 257 40.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.5e-27 127.5 281 40.6
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.9e-27 127.1 235 41.3
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.6e-26 122.9 258 39.9
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.8e-25 120.6 257 37.7
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 4.0e-25 119.4 259 40.9
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.3e-23 114.4 254 37.0
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 6.4e-23 112.1 260 38.1
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 6.4e-23 112.1 135 51.1
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 8.4e-23 111.7 122 56.6
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.4e-23 111.7 259 35.5
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.4e-22 110.2 259 36.7
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.4e-22 109.0 248 35.9
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.1e-21 107.1 254 36.6
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 7.8e-21 105.1 251 37.5
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.7e-20 104.0 365 32.1
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.5e-19 100.9 152 48.7
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 2.8e-18 96.7 257 35.8
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 4.5e-16 89.4 184 41.3
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 7.6e-16 88.6 108 50.9
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.4e-14 84.3 92 56.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.9e-14 84.0 224 37.9
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 4.2e-14 82.8 249 34.1
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.6e-13 80.9 233 35.2
FAN05G3047 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-12 78.2 86 52.3
FAN18G3548 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.9e-12 76.3 105 44.8
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 3.3e-11 73.2 261 30.7
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 3.6e-10 69.7 66 56.1
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.8e-10 69.3 74 55.4
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 6.2e-10 68.9 204 32.8
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 6.2e-10 68.9 261 33.0
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 2.4e-09 67.0 195 33.8
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 2.4e-09 67.0 86 45.3
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.5e-08 64.3 99 44.4
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 5.8e-08 62.4 111 41.4
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 2.9e-07 60.1 181 32.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-06 57.8 158 34.2
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 1.9e-06 57.4 194 33.0
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.4e-06 57.0 57 61.4
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 9.3e-06 55.1 141 36.2


User provided reference genes

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