Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.0e-162 576.6 290 100.0
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 3.0e-117 425.6 255 83.9
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 3.9e-117 425.2 255 83.9
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.3e-115 420.2 255 83.9
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 7.1e-111 404.4 226 88.9
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 2.8e-83 312.8 228 70.2
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 4.2e-79 298.9 235 65.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 6.1e-78 295.0 251 63.7
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 8.0e-78 294.7 229 67.2
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 1.5e-76 290.4 227 66.1
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 3.3e-76 289.3 231 68.0
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 9.7e-76 287.7 248 62.5
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 2.2e-75 286.6 256 60.9
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 6.3e-75 285.0 251 61.8
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 1.1e-74 284.3 236 63.1
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 2.4e-74 283.1 238 60.9
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 9.1e-74 281.2 236 61.9
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 9.1e-74 281.2 243 61.3
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 2.0e-73 280.0 241 62.7
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 2.7e-73 279.6 255 60.8
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 3.5e-73 279.3 250 60.4
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 4.5e-73 278.9 243 63.0
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 7.7e-73 278.1 243 61.3
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 1.0e-72 277.7 233 62.7
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 2.2e-72 276.6 233 63.1
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 2.2e-72 276.6 233 63.1
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.9e-72 276.2 251 59.8
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 3.8e-72 275.8 240 61.2
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 5.0e-72 275.4 254 58.3
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 1.5e-71 273.9 234 62.0
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 4.2e-71 272.3 254 57.5
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 5.5e-71 271.9 230 61.3
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.2e-70 270.8 244 58.6
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 2.1e-70 270.0 237 60.3
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 6.1e-70 268.5 231 61.5
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 1.0e-69 267.7 241 59.3
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 1.4e-69 267.3 229 62.0
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 1.4e-69 267.3 228 62.7
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.4e-69 267.3 231 61.5
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 3.0e-69 266.2 254 57.9
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 8.8e-69 264.6 254 55.9
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 2.0e-68 263.5 245 58.4
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 4.4e-68 262.3 244 59.0
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 9.8e-68 261.2 238 60.1
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 1.7e-67 260.4 227 60.4
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 4.8e-67 258.8 252 57.9
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 2.8e-62 243.0 202 62.4
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 2.2e-59 233.4 243 53.5
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 2.1e-54 216.9 242 51.7
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 8.0e-54 214.9 262 46.2
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.8e-53 213.8 241 48.5
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 3.4e-52 209.5 248 48.8
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 5.7e-52 208.8 265 48.3
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 5.7e-52 208.8 239 51.9
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 2.9e-51 206.5 232 47.8
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 3.7e-51 206.1 242 46.7
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 6.4e-51 205.3 263 45.2
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 3.2e-50 203.0 244 46.7
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 9.2e-50 201.4 230 46.5
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 1.6e-49 200.7 241 48.1
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 1.6e-49 200.7 230 46.5
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 3.5e-49 199.5 255 44.7
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 1.7e-48 197.2 224 51.8
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 1.7e-48 197.2 242 45.9
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 1.7e-48 197.2 230 46.1
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.9e-48 196.1 234 46.2
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 5.0e-48 195.7 244 46.3
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 6.6e-48 195.3 239 44.8
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.5e-47 194.1 236 47.5
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 3.3e-47 193.0 259 47.5
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 4.3e-47 192.6 238 47.5
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 6.2e-46 188.7 256 44.9
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.8e-45 187.2 299 39.1
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 8.9e-45 184.9 230 45.2
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.0e-44 183.7 251 43.8
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.1e-42 177.9 255 41.6
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.2e-42 176.4 212 44.8
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.0e-40 171.4 241 45.6
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 2.3e-40 170.2 238 45.8
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 3.3e-39 166.4 165 58.8
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 1.1e-37 161.4 237 42.2
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.3e-37 160.2 237 44.3
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.5e-36 157.5 237 43.5
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 4.4e-36 156.0 268 39.2
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 1.0e-32 144.8 288 33.3
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 1.0e-32 144.8 230 41.7
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 8.6e-32 141.7 134 55.2
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 4.3e-31 139.4 244 38.1
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.1e-30 137.1 142 51.4
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 2.8e-30 136.7 299 32.4
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.4e-29 134.4 142 50.0
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.3e-29 133.7 156 47.4
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 1.5e-28 131.0 342 31.0
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 4.9e-27 125.9 97 67.0
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 8.6e-24 115.2 99 56.6
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 1.1e-23 114.8 124 50.0
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 7.3e-23 112.1 203 37.4
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.7e-19 100.9 147 42.2
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 4.2e-18 96.3 254 28.7
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 8.7e-16 88.6 188 31.9
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.8e-14 82.8 142 35.2
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 2.6e-12 77.0 95 44.2
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 1.7e-11 74.3 54 70.4
Cpa.g.sc28.27 Carica papaya HOM05D007273 ORTHO05D009230 3.0e-08 63.5 67 52.2
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 2.1e-06 57.4 218 25.7
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 8.1e-06 55.5 99 37.4


User provided reference genes

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