Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G147300 Theobroma cacao HOM05D000003 ORTHO05D000022 9.3e-77 290.0 137 100.0
Thecc.06G036400 Theobroma cacao HOM05D000003 ORTHO05D010953 5.9e-15 84.7 72 54.2
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 1.3e-14 83.6 71 50.7
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 6.5e-14 81.3 71 49.3
Thecc.04G008500 Theobroma cacao HOM05D000088 ORTHO05D000830 1.0e-11 73.9 77 45.5
CARHR105380 Cardamine hirsuta HOM05D000003 ORTHO05D000022 3.0e-11 72.4 90 44.4
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 4.0e-11 72.0 82 46.3
Atru.chr8.1687 Acer truncatum HOM05D000003 ORTHO05D000022 6.8e-11 71.2 68 42.6
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-10 68.6 71 45.1
Prupe.4G223300 Prunus persica HOM05D000279 ORTHO05D000022 5.7e-10 68.2 71 42.3
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.7e-10 68.2 67 38.8
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 9.8e-10 67.4 82 37.8
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 1.3e-09 67.0 105 32.4
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-09 66.6 67 41.8
CARHR035340 Cardamine hirsuta HOM05D000003 ORTHO05D000022 2.2e-09 66.2 88 40.9
Atru.chr11.1243 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-09 65.1 75 37.3
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-09 65.1 61 44.3
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-09 65.1 67 41.8
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-09 65.1 82 37.8
Atru.chr9.658 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 64.7 62 43.5
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 8.3e-09 64.3 68 39.7
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 8.3e-09 64.3 73 41.1
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-09 64.3 71 39.4
Atru.chr10.394 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 63.9 68 41.2
Atru.chr9.1513 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 63.9 62 41.9
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-08 63.5 64 45.3
CARHR181910 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.8e-08 63.2 62 43.5
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.8e-08 63.2 70 37.1
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 2.4e-08 62.8 61 41.0
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.4 83 36.1
Atru.chr2.53 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-08 62.4 84 38.1
Lj3g0014530 Lotus japonicus HOM05D000003 ORTHO05D000022 3.1e-08 62.4 139 32.4
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 3.1e-08 62.4 62 41.9
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.1e-08 62.4 80 41.2
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-08 62.0 62 40.3
Atru.chr10.897 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-08 62.0 84 38.1
Atru.chr4.1862 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.0 77 37.7
CARHR220690 Cardamine hirsuta HOM05D000003 ORTHO05D000022 4.1e-08 62.0 67 44.8
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 4.1e-08 62.0 62 40.3
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 5.4e-08 61.6 63 44.4
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 5.4e-08 61.6 62 40.3
Atru.chr9.1443 Acer truncatum HOM05D000003 ORTHO05D000022 7.0e-08 61.2 68 39.7
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 9.1e-08 60.8 76 36.8
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-08 60.8 78 34.6
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-08 60.8 62 40.3
Atru.chr9.1525 Acer truncatum HOM05D000003 ORTHO05D000022 9.1e-08 60.8 62 41.9
CARHR098760 Cardamine hirsuta HOM05D000003 ORTHO05D000022 9.1e-08 60.8 70 44.3
CARHR121910 Cardamine hirsuta HOM05D000155 ORTHO05D000022 9.1e-08 60.8 77 37.7
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-07 60.5 91 31.9
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-07 60.5 75 34.7
CARHR111550 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.2e-07 60.5 60 46.7
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 1.2e-07 60.5 64 45.3
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-07 60.5 62 41.9
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-07 60.1 62 38.7
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-07 60.1 137 29.9
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.7 68 39.7
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-07 59.7 68 38.2
FvH4_6g18164 Fragaria vesca HOM05D000003 ORTHO05D000022 2.0e-07 59.7 139 28.1
Lj6g0023576 Lotus japonicus HOM05D000003 ORTHO05D000022 2.0e-07 59.7 116 30.2
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-07 59.3 62 38.7
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-07 59.3 67 41.8
CSS0021884 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.7e-07 59.3 64 40.6
Thecc.10G094100 Theobroma cacao HOM05D000003 ORTHO05D000022 2.7e-07 59.3 56 50.0
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 3.5e-07 58.9 62 40.3
RcHm_v2.0_Chr2g0128961 Rosa chinensis HOM05D000003 ORTHO05D000022 3.5e-07 58.9 68 39.7
RcHm_v2.0_Chr5g0041481 Rosa chinensis HOM05D000279 ORTHO05D000498 3.5e-07 58.9 71 39.4
Atru.chr12.1989 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-07 58.5 64 43.8
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 5.9e-07 58.2 61 41.0
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 7.7e-07 57.8 61 37.7
Prupe.6G123500 Prunus persica HOM05D000003 ORTHO05D000022 7.7e-07 57.8 69 34.8
FvH4_3g23491 Fragaria vesca HOM05D000279 ORTHO05D000957 1.0e-06 57.4 79 38.0
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 57.0 75 34.7
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-06 57.0 67 38.8
CARHR054120 Cardamine hirsuta HOM05D000003 ORTHO05D000022 1.3e-06 57.0 61 45.9
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 1.7e-06 56.6 63 39.7
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.7e-06 56.6 63 39.7
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-06 56.2 64 42.2
CARHR104870 Cardamine hirsuta HOM05D000003 ORTHO05D000022 2.3e-06 56.2 70 45.7
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 2.3e-06 56.2 63 39.7
RcHm_v2.0_Chr5g0074971 Rosa chinensis HOM05D000003 ORTHO05D000022 2.3e-06 56.2 80 37.5
SHI41809 Sapria himalayana HOM05D000003 ORTHO05D000004 2.3e-06 56.2 102 29.4
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-06 55.8 63 38.1
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 2.9e-06 55.8 63 39.7
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-06 55.5 63 39.7
Atru.chr11.860 Acer truncatum HOM05D000003 ORTHO05D000022 5.0e-06 55.1 75 30.7
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 5.0e-06 55.1 75 34.7
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 6.6e-06 54.7 69 39.1
Atru.chr7.949 Acer truncatum HOM05D000003 ORTHO05D000022 6.6e-06 54.7 62 35.5
Atru.chr12.1675 Acer truncatum HOM05D000003 ORTHO05D000022 8.6e-06 54.3 63 38.1


User provided reference genes

Program Settings