Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 5.0e-238 827.4 423 100.0
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.4e-216 755.4 424 91.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 5.4e-216 754.2 424 91.0
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 4.1e-208 728.0 424 88.7
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.7e-206 722.6 403 91.8
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.3e-198 696.4 428 83.4
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 1.1e-197 693.3 423 84.2
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-197 693.0 428 82.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 1.6e-196 689.5 428 82.5
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.1e-195 685.3 428 82.2
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.5e-194 682.9 426 81.7
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.3e-193 679.9 423 81.1
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 6.4e-193 677.6 429 81.4
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 2.4e-192 675.6 426 81.5
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.2e-191 673.3 423 81.1
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 2.0e-191 672.5 427 81.5
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.0e-191 672.5 426 79.6
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 3.5e-191 671.8 429 79.5
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 4.6e-191 671.4 424 80.9
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 6.0e-191 671.0 426 81.0
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 7.8e-191 670.6 429 79.5
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 7.8e-191 670.6 427 80.8
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.0e-190 670.2 428 79.4
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.0e-190 670.2 429 79.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.3e-190 669.8 389 85.3
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.3e-190 669.8 427 80.8
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.3e-190 669.1 427 80.6
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.0e-190 668.7 423 80.6
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 5.0e-190 667.9 392 84.9
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 6.6e-190 667.5 423 80.9
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 8.6e-190 667.2 427 80.6
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.5e-189 666.4 423 80.6
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.5e-189 665.6 423 80.6
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 7.3e-189 664.1 423 80.4
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 7.3e-189 664.1 420 80.0
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 9.5e-189 663.7 426 80.5
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.6e-188 662.9 423 80.4
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 4.7e-188 661.4 389 84.6
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 6.2e-188 661.0 426 79.6
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.1e-187 660.2 423 82.5
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 2.3e-187 659.1 432 77.3
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.3e-187 659.1 420 80.2
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.1e-187 658.7 425 79.8
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 8.9e-187 657.1 423 79.9
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.6e-186 655.6 425 79.8
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.6e-186 655.6 426 80.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.4e-186 655.2 410 81.2
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 9.9e-186 653.7 391 84.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.7e-185 652.9 393 83.0
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.2e-185 652.5 396 81.3
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.2e-185 652.5 429 77.4
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 4.9e-185 651.4 411 81.0
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.9e-184 649.4 392 81.9
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 7.1e-184 647.5 428 76.9
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 7.1e-184 647.5 428 77.1
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.2e-183 646.7 425 77.9
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.6e-183 646.4 428 77.1
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.1e-183 646.0 420 78.8
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.7e-183 645.6 392 82.1
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.7e-183 645.6 423 77.3
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 6.0e-183 644.4 426 77.2
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 6.0e-183 644.4 423 78.5
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 6.0e-183 644.4 427 77.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.7e-182 642.9 423 78.0
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.7e-182 642.9 427 77.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.9e-182 641.7 432 75.9
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 6.6e-182 641.0 432 75.2
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.6e-182 641.0 431 76.3
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.1e-181 640.2 429 76.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.6e-180 636.3 429 75.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.8e-180 635.6 423 77.5
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.8e-180 635.6 431 75.4
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.6e-180 635.2 432 75.5
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 8.1e-180 634.0 423 76.8
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.4e-179 633.3 425 77.4
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.4e-179 632.5 427 75.9
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 5.2e-179 631.3 423 76.1
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 2.0e-178 629.4 427 75.6
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 4.4e-178 628.2 424 75.2
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 4.4e-178 628.2 424 75.2
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 4.4e-178 628.2 424 75.2
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 7.6e-178 627.5 427 75.2
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 7.6e-178 627.5 426 76.8
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.9e-178 627.1 405 79.5
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.3e-177 626.7 392 78.8
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.2e-177 625.9 427 74.9
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.9e-177 625.5 427 74.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.9e-177 625.5 427 74.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 2.9e-177 625.5 427 75.9
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 6.4e-177 624.4 427 74.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.4e-177 624.4 424 75.5
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 8.4e-177 624.0 431 77.3
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 8.4e-177 624.0 427 76.1
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-176 623.6 426 75.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.4e-176 623.2 403 79.9
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.9e-176 622.9 429 76.2
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.2e-176 622.1 424 74.8
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.2e-176 622.1 404 77.0
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 9.2e-176 620.5 403 79.4
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.1e-175 619.4 424 76.9
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 2.1e-175 619.4 406 79.3
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.1e-175 619.4 423 74.9
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 6.0e-175 617.8 427 74.7
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.7e-174 616.3 430 73.0
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.9e-174 615.1 379 84.2
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.9e-174 615.1 405 78.3
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.5e-173 613.2 424 73.8
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 1.2e-172 610.1 423 74.0
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 8.1e-172 607.4 380 79.5
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 1.1e-171 607.1 423 73.5
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.8e-171 606.3 476 68.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 3.1e-171 605.5 420 75.2
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 7.6e-170 600.9 410 74.4
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.9e-169 599.0 367 81.5
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 8.4e-169 597.4 424 72.6
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 7.1e-168 594.3 431 71.9
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 1.2e-167 593.6 361 81.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.2e-167 593.6 430 72.6
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.6e-167 593.2 423 72.8
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 5.1e-166 588.2 408 74.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 8.7e-166 587.4 335 85.7
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.5e-165 585.9 408 74.5
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.3e-165 585.5 392 75.0
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 5.6e-165 584.7 431 72.6
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 9.6e-165 583.9 411 75.9
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 4.8e-164 581.6 429 70.9
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.1e-163 580.5 426 71.8
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.0e-159 564.7 439 69.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.0e-158 563.9 453 67.3
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.3e-158 563.5 412 69.2
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.1e-156 556.2 322 85.1
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 4.2e-152 542.0 374 70.6
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.9e-151 537.7 315 84.8
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.6e-148 530.0 423 64.3
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 4.5e-146 521.9 392 66.6
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 7.6e-146 521.2 437 67.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.6e-143 513.5 416 68.5
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.5e-143 512.3 395 66.1
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 6.0e-143 511.5 377 73.5
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 6.0e-143 511.5 416 68.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.4e-139 499.6 351 72.9
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 7.9e-135 484.6 429 61.1
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 4.3e-133 478.8 332 75.3
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 4.3e-133 478.8 399 61.2
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.7e-132 476.9 404 66.1
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 3.1e-131 472.6 423 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 9.1e-131 471.1 414 60.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.3e-124 448.4 372 64.5
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 6.1e-119 431.8 241 89.2
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.5e-113 411.4 335 64.5
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 3.7e-108 396.0 231 83.5
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.4e-107 394.0 271 72.3
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.1e-99 367.9 211 88.6
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.6e-95 354.0 409 49.1
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 4.4e-93 345.9 383 49.1
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.1e-87 327.0 390 47.9
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 5.2e-86 322.4 273 60.4
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 2.7e-82 310.1 349 54.4
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.3e-80 302.0 196 75.0
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.1e-75 286.2 151 91.4
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 8.6e-65 251.9 222 62.6
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.6e-63 247.7 308 45.1
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.6e-63 246.5 302 46.0
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 9.6e-56 221.9 214 56.1
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 9.0e-54 215.3 304 41.4
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.3e-49 200.7 120 81.7
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.5e-48 197.2 182 59.3
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.6e-48 196.1 424 35.6
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 8.1e-39 165.6 132 68.9
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.2e-26 125.2 88 70.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.6e-26 123.2 76 76.3
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.9e-24 117.9 69 84.1
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.3e-22 109.8 75 70.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 4.2e-19 100.1 61 73.8
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 2.7e-18 97.4 119 51.3
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.3e-15 88.6 106 50.9
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.7e-15 88.2 55 74.5
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.9e-14 82.8 54 66.7
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.2e-13 82.0 60 68.3
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.4e-11 75.1 123 39.8
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.9e-09 67.0 168 32.1
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 4.8e-07 60.1 55 60.0
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 5.3e-06 56.6 35 71.4


User provided reference genes

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