Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.9e-146 521.9 277 100.0
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.6e-139 499.6 276 94.9
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.5e-131 471.5 277 87.4
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 5.0e-130 468.0 277 86.6
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.3e-129 464.9 277 85.9
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 9.8e-126 453.8 277 85.9
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.9e-125 451.4 277 83.8
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.8e-124 449.5 277 83.8
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 7.0e-124 447.6 277 83.8
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.2e-123 446.8 277 84.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.9e-123 444.5 277 83.8
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.9e-123 444.5 277 83.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.3e-122 443.4 277 83.8
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.3e-122 442.6 272 84.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.1e-121 440.3 274 82.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-121 439.9 277 83.0
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.5e-121 439.1 277 81.6
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 9.5e-121 437.2 277 83.0
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.1e-120 436.0 274 81.0
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.1e-120 436.0 276 83.0
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 3.6e-120 435.3 277 81.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 4.7e-120 434.9 272 82.7
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.4e-119 433.3 274 82.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.8e-119 433.0 276 80.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-119 432.6 288 80.6
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 3.1e-119 432.2 277 80.5
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-119 432.2 277 80.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 8.9e-119 430.6 277 80.1
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.5e-118 429.9 274 79.9
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.5e-118 429.9 274 79.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 4.4e-118 428.3 274 80.7
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 9.8e-118 427.2 277 80.1
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 9.8e-118 427.2 277 79.1
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.9e-117 425.6 274 79.9
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 8.3e-117 424.1 274 78.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.4e-116 423.3 273 78.4
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-116 422.9 273 79.1
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 7.0e-116 421.0 274 77.4
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 9.2e-116 420.6 274 77.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.0e-115 419.5 274 78.5
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 78.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 7.8e-115 417.5 274 79.6
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.3e-114 416.8 273 79.5
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.3e-114 416.0 271 80.1
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.9e-114 415.2 274 78.1
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 5.0e-114 414.8 274 77.0
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 5.0e-114 414.8 273 78.4
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 8.6e-114 414.1 273 77.7
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 8.6e-114 414.1 274 78.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.1e-113 413.7 277 78.0
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.5e-113 412.5 277 78.0
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.5e-113 412.5 274 76.6
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.3e-113 412.1 274 78.1
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.3e-113 411.8 270 78.1
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 4.3e-113 411.8 280 76.8
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 7.3e-113 411.0 274 77.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 9.5e-113 410.6 273 77.3
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 9.5e-113 410.6 273 77.3
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.2e-112 410.2 274 76.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.6e-112 409.8 277 77.6
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-112 409.5 277 76.9
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.8e-112 409.1 277 76.5
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.6e-112 408.7 277 76.9
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.6e-112 408.7 270 77.4
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 6.2e-112 407.9 271 77.9
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 8.1e-112 407.5 277 76.2
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 8.1e-112 407.5 281 76.2
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.4e-111 406.8 273 77.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-111 406.8 277 75.8
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.8e-111 406.4 275 77.8
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.3e-111 406.0 304 71.1
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 3.1e-111 405.6 277 75.5
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 4.0e-111 405.2 277 75.5
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 4.0e-111 405.2 277 76.2
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 5.2e-111 404.8 272 78.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.8e-111 404.4 273 77.7
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 6.8e-111 404.4 277 75.8
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 6.8e-111 404.4 273 76.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.2e-110 403.7 274 77.0
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.0e-110 402.9 273 76.9
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.6e-110 402.5 273 76.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 75.5
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.8e-110 401.4 284 75.4
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.2e-109 399.4 278 75.2
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 2.2e-109 399.4 277 75.1
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.9e-109 399.1 293 72.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-108 395.6 277 74.4
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-108 395.6 277 74.4
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 3.2e-108 395.6 277 74.4
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 74.0
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.1e-108 395.2 275 76.0
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.2e-107 393.7 275 76.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.7e-107 392.5 277 72.9
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 72.9
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 6.0e-107 391.3 277 72.9
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.3e-106 389.4 277 75.8
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.9e-106 388.7 281 73.0
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 5.6e-105 384.8 319 67.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.4e-103 380.2 269 73.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 1.8e-103 379.8 275 71.3
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.5e-102 376.7 267 73.8
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.4e-102 375.2 291 69.4
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 5.8e-102 374.8 336 62.5
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.2e-99 367.1 368 57.9
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.8e-99 364.4 272 70.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.8e-99 364.4 323 63.5
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.0e-98 364.0 275 70.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.3e-98 363.6 257 72.8
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.0e-98 362.5 274 70.1
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 3.9e-98 362.1 274 68.2
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.6e-98 361.3 275 69.1
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.8e-96 355.9 273 69.6
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 5.2e-95 351.7 266 70.3
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.2e-92 342.4 271 61.6
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.3e-90 336.3 266 66.2
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.0e-90 335.9 275 60.7
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.3e-88 330.5 213 80.3
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.1e-87 327.4 259 73.0
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 2.2e-85 319.7 272 61.8
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.4e-84 316.2 487 43.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 7.1e-84 314.7 487 43.5
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.5e-83 312.4 267 62.2
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-82 310.5 255 64.7
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.1e-80 301.2 264 59.8
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-79 299.7 255 63.9
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.3e-79 298.5 264 58.7
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-78 296.6 282 58.2
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-78 296.2 258 63.6
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.4e-78 295.8 282 58.5
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 7.6e-78 294.7 264 58.3
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-77 293.9 259 63.3
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.4e-76 290.4 263 57.4
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-75 287.3 282 57.4
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 6.0e-75 285.0 282 57.4
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 6.0e-75 285.0 282 57.8
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.3e-72 277.3 277 53.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 3.4e-70 269.2 300 57.3
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 7.6e-70 268.1 164 81.1
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.4e-68 263.8 276 51.1
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 7.1e-68 261.5 226 63.7
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 6.0e-67 258.5 280 55.0
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-65 254.2 256 56.6
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 4.2e-60 235.7 267 50.6
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.5e-60 235.3 147 80.3
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.2e-53 213.4 271 49.1
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.5e-53 211.8 252 50.0
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-52 210.7 267 49.4
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-51 206.5 131 80.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.4e-46 189.5 136 73.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-45 187.2 148 67.6
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.5e-45 185.3 164 65.2
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.5e-45 185.3 131 73.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 9.4e-44 181.4 415 34.0
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.0e-42 177.9 138 63.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 9.7e-41 171.4 228 46.5
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.0e-38 163.7 130 65.4
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.0e-38 163.7 96 85.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.2e-35 154.5 120 69.2
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.1e-31 141.4 123 60.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 7.7e-30 135.2 139 58.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 5.0e-29 132.5 261 35.6
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 8.8e-26 121.7 264 31.4
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 5.7e-25 119.0 297 29.6
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.1e-23 113.2 150 48.0
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.1e-23 113.2 68 80.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.1e-23 113.2 68 80.9
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.2e-22 111.3 73 82.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.5e-22 109.8 68 77.9
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.0e-21 108.2 68 77.9
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-20 102.8 111 53.2
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.5e-17 94.4 53 84.9
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.0e-17 94.0 59 79.7
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.4e-17 92.8 74 66.2
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 5.7e-17 92.4 69 65.2
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-16 91.3 52 86.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-16 90.9 52 84.6
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 52 84.6
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 83 57.8
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 3.7e-16 89.7 52 84.6
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 4.9e-16 89.4 68 67.6
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 8.3e-16 88.6 52 84.6
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 7.0e-15 85.5 50 82.0
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.6e-12 75.9 48 75.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 8.3e-08 62.0 66 50.0
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 2.4e-07 60.5 40 75.0


User provided reference genes

Program Settings