Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 3.2e-147 525.0 259 100.0
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.3e-116 423.3 262 80.9
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 6.6e-116 421.0 262 80.5
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 3.0e-100 369.0 267 70.0
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 3.6e-98 362.1 266 67.7
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 1.1e-97 360.5 267 66.7
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 5.2e-97 358.2 258 69.4
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 8.9e-97 357.5 267 67.4
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 3.4e-96 355.5 267 68.2
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 9.9e-96 354.0 266 68.4
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 3.8e-95 352.1 267 68.2
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 8.4e-95 350.9 256 67.6
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 3.2e-94 349.0 268 67.2
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 7.1e-94 347.8 267 66.3
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.6e-93 346.7 267 66.3
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.5e-93 345.5 268 64.2
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.5e-93 345.5 268 64.2
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 3.9e-92 342.0 268 64.9
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 3.9e-92 342.0 263 66.5
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 8.7e-92 340.9 262 66.0
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.1e-91 340.5 273 63.7
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.1e-91 340.5 268 65.3
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 1.5e-91 340.1 265 64.2
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 5.6e-91 338.2 281 61.2
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 1.6e-90 336.7 267 63.7
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 6.2e-90 334.7 267 62.9
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 1.1e-89 334.0 268 63.1
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.4e-89 333.6 194 84.5
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 2.4e-89 332.8 266 63.2
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 6.9e-89 331.3 256 66.4
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 2.0e-88 329.7 265 63.4
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 2.0e-88 329.7 268 63.4
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 2.6e-88 329.3 267 61.8
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 3.4e-88 328.9 268 63.4
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 9.9e-88 327.4 263 62.7
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 9.9e-88 327.4 259 67.6
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 4.9e-87 325.1 265 63.8
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 8.4e-87 324.3 265 63.0
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 6.0e-85 318.2 274 62.4
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 1.3e-84 317.0 259 61.0
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 1.3e-84 317.0 259 61.8
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 2.3e-84 316.2 263 60.1
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 5.1e-84 315.1 266 60.5
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 8.7e-84 314.3 259 61.8
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.5e-83 313.5 263 59.7
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.9e-83 313.2 226 69.9
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 1.9e-83 313.2 260 61.9
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 2.5e-83 312.8 263 60.1
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 2.5e-83 312.8 256 60.2
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 9.6e-83 310.8 259 61.0
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.3e-82 310.5 273 59.0
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 1.6e-82 310.1 256 59.4
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 4.0e-81 305.4 254 63.0
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 7.6e-80 301.2 255 59.2
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 7.6e-80 301.2 254 61.8
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 9.9e-80 300.8 258 61.6
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 1.7e-79 300.1 247 62.8
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 2.2e-79 299.7 206 70.9
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.9e-79 299.3 254 61.0
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 3.8e-79 298.9 262 58.8
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 6.4e-79 298.1 263 60.1
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 6.4e-79 298.1 254 60.6
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 6.4e-79 298.1 267 59.2
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 1.1e-78 297.4 263 59.3
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.1e-78 297.4 255 60.8
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.4e-78 296.2 256 60.9
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 5.4e-78 295.0 302 53.3
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 9.3e-78 294.3 264 58.7
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 2.1e-77 293.1 191 73.8
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 7.9e-77 291.2 246 62.2
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 1.0e-76 290.8 191 72.8
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.5e-75 287.0 261 56.7
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 3.3e-75 285.8 239 63.6
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 3.3e-75 285.8 269 55.8
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 4.0e-73 278.9 282 52.1
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 2.0e-72 276.6 258 57.8
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.7e-71 273.5 210 64.3
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 2.5e-70 269.6 219 61.6
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 9.3e-70 267.7 260 55.0
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 1.6e-69 266.9 260 55.8
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 4.6e-69 265.4 253 55.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 7.9e-69 264.6 278 52.9
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 2.1e-66 256.5 259 56.0
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 2.1e-66 256.5 198 66.7
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 2.7e-61 239.6 263 47.5
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 7.9e-61 238.0 255 47.8
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 7.4e-59 231.5 279 48.7
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.3e-58 230.7 259 52.9
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 8.2e-58 228.0 205 60.5
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 8.2e-58 228.0 192 63.5
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.1e-57 227.6 198 61.1
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.4e-57 226.5 144 71.5
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 4.1e-57 225.7 256 46.5
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.3e-55 220.7 183 59.0
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.3e-55 220.7 271 46.1
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.2e-54 216.1 203 57.1
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.2e-54 216.1 190 60.5
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 6.1e-53 211.8 323 42.1
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.5e-40 169.5 161 57.1
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 3.5e-40 169.5 139 63.3
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 1.7e-39 167.2 160 56.9
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.1e-38 164.5 177 54.2
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 6.1e-37 158.7 136 61.8
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 8.8e-36 154.8 157 54.1
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 1.1e-35 154.5 161 57.1
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 9.1e-33 144.8 242 37.6
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 5.9e-32 142.1 172 51.2
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 6.1e-29 132.1 107 54.2
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.6e-24 117.5 70 77.1
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.1e-22 111.3 71 74.6
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 1.6e-21 107.5 173 35.8
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 6.3e-18 95.5 174 35.6
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 1.1e-17 94.7 208 33.2
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 1.0e-12 78.2 208 29.3
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 2.7e-08 63.5 268 26.9
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 3.5e-08 63.2 139 32.4
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 3.5e-08 63.2 139 32.4
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 7.8e-08 62.0 136 30.1
A08p10520 Brassica napus HOM05D007105 ORTHO05D006179 5.0e-07 59.3 136 29.4
BraA08t33052Z Brassica rapa HOM05D007105 ORTHO05D009304 5.0e-07 59.3 136 29.4


User provided reference genes

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