Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 4.1e-122 441.4 225 100.0
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 8.3e-91 337.4 229 75.5
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 3.5e-89 332.0 229 78.2
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 5.0e-88 328.2 229 77.3
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 2.1e-81 306.2 225 67.1
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 6.9e-53 211.5 249 49.0
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 6.9e-53 211.5 232 50.9
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 9.9e-52 207.6 222 50.9
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 1.9e-50 203.4 244 50.8
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 1.6e-49 200.3 247 47.8
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 9.6e-47 191.0 227 47.6
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 4.8e-46 188.7 236 46.2
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 4.0e-45 185.7 236 46.6
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 2.6e-44 183.0 240 45.4
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 5.8e-44 181.8 242 46.3
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 2.9e-43 179.5 232 44.8
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.9e-43 179.5 232 44.8
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.2e-42 175.6 231 44.2
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 5.5e-42 175.3 231 44.6
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 7.1e-42 174.9 245 43.3
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 9.3e-42 174.5 231 44.6
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 4.6e-41 172.2 242 42.1
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.5e-39 167.2 231 43.3
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 2.1e-38 163.3 247 42.5
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 4.8e-38 162.2 242 41.3
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 1.1e-37 161.0 210 50.5
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 1.4e-37 160.6 249 39.0
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 7.6e-36 154.8 253 40.3
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 1.7e-35 153.7 221 42.5
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 5.0e-35 152.1 271 38.4
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.5e-34 149.8 258 39.9
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 7.2e-34 148.3 227 41.0
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 1.6e-33 147.1 237 38.4
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 1.0e-32 144.4 207 40.6
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 1.0e-32 144.4 232 40.1
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 1.3e-32 144.1 238 37.8
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 3.9e-32 142.5 238 37.4
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 6.7e-32 141.7 237 36.7
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 6.7e-32 141.7 241 39.0
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.5e-31 140.6 245 36.7
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 5.7e-31 138.7 232 38.8
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 7.4e-31 138.3 238 38.2
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 1.6e-30 137.1 246 37.4
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 1.6e-30 137.1 243 37.0
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 1.6e-30 137.1 233 37.3
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 2.2e-30 136.7 243 36.6
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 2.4e-29 133.3 227 41.4
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 6.9e-29 131.7 235 34.5
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 6.9e-29 131.7 252 34.9
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 2.0e-28 130.2 265 34.0
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 2.6e-28 129.8 226 37.2
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 3.4e-28 129.4 272 32.7
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.5e-28 129.0 253 34.8
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 7.7e-28 128.3 252 33.7
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 1.0e-27 127.9 225 37.8
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 1.0e-27 127.9 229 35.4
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.9e-27 126.3 241 35.7
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 5.0e-27 125.6 210 37.6
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 1.4e-26 124.0 233 36.5
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.4e-26 124.0 261 32.2
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.9e-26 123.6 263 31.6
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 3.2e-26 122.9 222 36.0
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 3.2e-26 122.9 217 35.0
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 3.2e-26 122.9 237 34.6
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 4.2e-26 122.5 263 33.8
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 5.5e-26 122.1 240 35.0
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 7.2e-26 121.7 220 40.5
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 1.6e-25 120.6 276 32.2
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 3.0e-24 116.3 121 51.2
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 5.1e-24 115.5 170 38.8
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 8.8e-24 114.8 226 33.6
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 1.1e-23 114.4 225 35.1
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 1.1e-23 114.4 231 33.8
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 2.5e-23 113.2 219 35.6
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 4.3e-23 112.5 235 34.9
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 2.2e-22 110.2 243 31.7
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 2.8e-22 109.8 246 32.5
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 2.8e-22 109.8 258 30.6
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 2.4e-21 106.7 224 34.8
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 2.4e-21 106.7 224 33.5
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 3.1e-21 106.3 224 33.9
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 6.9e-21 105.1 261 29.9
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 3.4e-20 102.8 254 30.3
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 2.9e-19 99.8 254 31.9
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 2.5e-18 96.7 238 26.9
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 4.2e-18 95.9 218 32.1
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 1.6e-17 94.0 220 33.6
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 1.6e-17 94.0 232 31.0
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.6e-17 92.8 101 51.5
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 4.7e-17 92.4 225 32.9
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 2.3e-16 90.1 250 27.6
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 1.1e-15 87.8 229 28.4
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.4e-15 85.9 224 29.9
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 7.4e-15 85.1 110 44.5
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 1.1e-13 81.3 77 49.4
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 2.4e-13 80.1 219 27.9
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.4e-13 80.1 101 48.5
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 1.0e-11 74.7 204 30.4
SMO119G0030 Selaginella moellendorffii HOM05D017347 ORTHO05D008131 5.5e-10 68.9 109 37.6
Pp3c10_10040 Physcomitrium patens HOM05D017347 ORTHO05D008131 2.7e-09 66.6 108 38.0
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 8.0e-09 65.1 88 38.6
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 5.2e-08 62.4 47 59.6
EL10Ac7g16802 Beta vulgaris HOM05D007097 ORTHO05D008131 8.2e-06 55.1 237 30.4


User provided reference genes

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