Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 1.7e-126 456.1 236 100.0
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 1.9e-93 346.3 244 75.4
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 1.9e-93 346.3 237 77.6
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 7.9e-84 314.3 237 73.0
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 5.1e-83 311.6 237 73.0
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 6.7e-83 311.2 237 72.6
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 2.4e-80 302.8 236 71.6
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 2.0e-79 299.7 212 78.3
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 7.7e-63 244.6 238 63.9
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.0e-62 244.2 238 63.4
Gohir.A04G060800 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.6e-55 219.5 238 59.7
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 4.5e-39 165.6 210 45.7
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 3.8e-38 162.5 244 46.7
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.5e-37 160.6 243 46.1
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 4.0e-35 152.5 219 44.7
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 1.2e-34 151.0 257 42.0
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 2.9e-33 146.4 199 46.2
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 2.4e-32 143.3 200 44.5
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 2.4e-32 143.3 250 43.6
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 9.2e-32 141.4 241 39.0
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 3.5e-31 139.4 202 45.5
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 1.7e-30 137.1 230 43.0
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 2.3e-30 136.7 202 45.5
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 3.0e-30 136.3 210 40.5
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 3.9e-30 136.0 202 44.6
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 1.5e-29 134.0 212 44.3
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 9.5e-29 131.3 191 46.1
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 1.4e-27 127.5 216 41.2
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 4.4e-26 122.5 214 41.6
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 2.9e-25 119.8 200 42.5
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 4.9e-25 119.0 193 43.0
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 4.9e-25 119.0 211 42.2
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 7.0e-24 115.2 201 42.3
Sabra16G0073900 Salix brachista HOM05D007532 ORTHO05D009483 7.0e-24 115.2 207 42.0
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 7.8e-23 111.7 214 39.7
Migut.L01834 Erythranthe guttata HOM05D007532 ORTHO05D009483 3.9e-22 109.4 216 38.9
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 1.1e-21 107.8 216 36.1
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 3.3e-21 106.3 202 38.1
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 4.3e-21 105.9 212 38.7
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 6.2e-20 102.1 209 37.8
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 8.1e-20 101.7 204 38.2
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 8.1e-20 101.7 204 38.2
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 4.0e-19 99.4 200 36.5
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 4.0e-19 99.4 200 36.5
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 5.2e-19 99.0 209 38.3
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 6.8e-19 98.6 211 37.0
BcaB01g00362 Brassica carinata HOM05D007532 ORTHO05D009483 8.9e-19 98.2 215 37.2
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 8.9e-19 98.2 199 39.7
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 1.2e-18 97.8 199 39.7
Actinidia04004 Actinidia chinensis HOM05D007532 ORTHO05D009483 2.0e-18 97.1 177 40.7
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 4.4e-18 95.9 231 36.4
Carub.0005s1887 Capsella rubella HOM05D007532 ORTHO05D009483 5.8e-18 95.5 204 37.3
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 9.8e-18 94.7 206 33.5
AT3G52480 Arabidopsis thaliana HOM05D007532 ORTHO05D009483 2.2e-17 93.6 201 36.3
FAN05G0427 Fragaria x ananassa HOM05D007532 ORTHO05D009483 2.2e-17 93.6 209 38.8
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 2.9e-17 93.2 214 39.3
CARHR162250 Cardamine hirsuta HOM05D007532 ORTHO05D009483 4.9e-17 92.4 223 35.0
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 8.3e-17 91.7 231 35.5
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 1.1e-16 91.3 213 37.6
Thhalv10010711m.g Eutrema salsugineum HOM05D007532 ORTHO05D009483 1.4e-16 90.9 211 35.5
Eucgr.A02598 Eucalyptus grandis HOM05D007532 ORTHO05D009483 4.1e-16 89.4 224 33.5
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 9.2e-16 88.2 218 36.2
Aa31LG10G7530 Aethionema arabicum HOM05D007532 ORTHO05D009483 7.8e-15 85.1 200 35.0
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 1.7e-14 84.0 201 34.8
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 1.7e-14 84.0 206 38.3
Lsat_1_v5_gn_1_57140 Lactuca sativa HOM05D007532 ORTHO05D009483 5.1e-14 82.4 199 35.7
Rhsim03G0066200 Rhododendron simsii HOM05D007532 ORTHO05D009483 8.6e-14 81.6 184 38.0
Ca_11714_v3 Cicer arietinum L. HOM05D007532 ORTHO05D009483 1.5e-13 80.9 205 35.1
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 2.5e-13 80.1 201 35.8
Lj5g0000288 Lotus japonicus HOM05D007532 ORTHO05D009483 2.5e-13 80.1 212 35.8
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 5.6e-13 79.0 205 32.2
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 7.3e-13 78.6 219 31.5
HanXRQChr14g0458181 Helianthus annuus HOM05D002150 ORTHO05D002191 2.1e-12 77.0 209 33.0
AL3G23190 Arabidopsis lyrata HOM05D014261 ORTHO05D016579 4.7e-12 75.9 205 35.1
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 4.7e-12 75.9 208 33.7
Aqoxy1G00693 Aquilegia oxysepala HOM05D007532 ORTHO05D009483 6.2e-12 75.5 196 34.2
MD14G1037100 Malus domestica HOM05D007532 ORTHO05D009483 1.1e-11 74.7 202 35.6
SGA_v2.0_scaffold35G14004 Striga asiatica HOM05D007532 ORTHO05D009483 1.1e-11 74.7 164 38.4
DCAR_027636 Daucus carota HOM05D002150 ORTHO05D002191 4.0e-11 72.8 209 33.0
Lsat_1_v5_gn_2_119741 Lactuca sativa HOM05D002150 ORTHO05D002191 6.8e-11 72.0 206 32.5
Sp3g09870 Schrenkiella parvula HOM05D014261 ORTHO05D016579 6.8e-11 72.0 149 41.6
Sp5g09820 Schrenkiella parvula HOM05D007532 ORTHO05D009483 6.8e-11 72.0 212 32.5
arahy.Tifrunner.gnm1.ann1.R0B094 Arachis hypogaea HOM05D007532 ORTHO05D009483 8.9e-11 71.6 204 35.8
arahy.Tifrunner.gnm1.ann1.U8RNVP Arachis hypogaea HOM05D007532 ORTHO05D009483 8.9e-11 71.6 204 35.8
Lj1C1049T4 Lonicera japonica HOM05D007532 ORTHO05D009483 8.9e-11 71.6 161 39.1
Medtr1g057220 Medicago truncatula HOM05D007532 ORTHO05D009483 1.5e-10 70.9 127 40.9
TPR.G31864 Trifolium pratense HOM05D007532 ORTHO05D009483 1.5e-10 70.9 216 32.4
Sc20g0006700 Simmondsia chinensis HOM05D007532 ORTHO05D009483 3.4e-10 69.7 188 33.5
Dinv31446 Davidia involucrata HOM05D002150 ORTHO05D002191 5.8e-10 68.9 213 31.9
Rhsim09G0165300 Rhododendron simsii HOM05D002150 ORTHO05D002191 5.8e-10 68.9 208 30.8
CSS0001235 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 7.6e-10 68.6 204 32.4
HanXRQChr08g0220401 Helianthus annuus HOM05D002150 ORTHO05D002191 7.6e-10 68.6 225 29.8
CSS0006598 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 9.9e-10 68.2 216 31.5
CSS0034701 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 9.9e-10 68.2 216 31.5
DCAR_016921 Daucus carota HOM05D007532 ORTHO05D009483 1.3e-09 67.8 200 31.0
Lsat_1_v5_gn_8_15640 Lactuca sativa HOM05D002150 ORTHO05D002191 1.3e-09 67.8 216 32.4
COL.COLO4_14995 Corchorus olitorius HOM05D002150 ORTHO05D002191 2.2e-09 67.0 205 31.2
Hma1.2p1_1263F.1_g271270 Hydrangea macrophylla HOM05D002150 ORTHO05D002191 2.2e-09 67.0 213 31.5
Actinidia02955 Actinidia chinensis HOM05D002150 ORTHO05D002191 2.9e-09 66.6 210 31.0
ATR0772G158 Amborella trichopoda HOM05D002150 ORTHO05D002191 3.7e-09 66.2 231 29.0
ECA238G0408 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-09 65.9 187 33.2
Manes.07G114700 Manihot esculenta HOM05D002150 ORTHO05D002191 6.4e-09 65.5 213 29.6
TAR369G0649 Trochodendron aralioides HOM05D002150 ORTHO05D002191 6.4e-09 65.5 241 29.5
AUR62037048 Chenopodium quinoa HOM05D007532 ORTHO05D009483 8.4e-09 65.1 209 30.6
Glyma.10G079300 Glycine max HOM05D007532 ORTHO05D009483 8.4e-09 65.1 96 44.8
AT3G11640 Arabidopsis thaliana HOM05D014261 ORTHO05D016579 1.4e-08 64.3 208 34.6
CARHR086190 Cardamine hirsuta HOM05D014261 ORTHO05D016579 1.9e-08 63.9 204 34.3
Duzib128G1760 Durio zibethinus HOM05D002150 ORTHO05D002191 1.9e-08 63.9 207 30.9
FAN10G3914 Fragaria x ananassa HOM05D002150 ORTHO05D002191 2.4e-08 63.5 235 28.9
Prupe.7G097300 Prunus persica HOM05D007532 ORTHO05D009483 2.4e-08 63.5 203 35.0
Aqoxy4G02951 Aquilegia oxysepala HOM05D002150 ORTHO05D002191 3.2e-08 63.2 218 30.3
FAN01G1088 Fragaria x ananassa HOM05D002150 ORTHO05D002191 3.2e-08 63.2 237 28.7
FAN06G3415 Fragaria x ananassa HOM05D002150 ORTHO05D002191 3.2e-08 63.2 237 28.7
FAN01G1666 Fragaria x ananassa HOM05D002150 ORTHO05D002191 4.1e-08 62.8 237 28.7
Prupe.2G233200 Prunus persica HOM05D002150 ORTHO05D002191 4.1e-08 62.8 218 30.7
QL08p059179 Quercus lobata HOM05D002150 ORTHO05D002191 5.4e-08 62.4 226 29.2
TWI15G1205 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 5.4e-08 62.4 210 31.4
FvH4_7g22100 Fragaria vesca HOM05D002150 ORTHO05D002191 7.1e-08 62.0 223 28.7
Thecc.10G044300 Theobroma cacao HOM05D002150 ORTHO05D002191 9.2e-08 61.6 215 27.4
CAN.G1013.11 Capsicum annuum HOM05D002150 ORTHO05D002191 1.2e-07 61.2 213 31.5
PGSC0003DMG400023425 Solanum tuberosum HOM05D002150 ORTHO05D002191 1.6e-07 60.8 213 31.5
AUR62006278 Chenopodium quinoa HOM05D007532 ORTHO05D009483 2.7e-07 60.1 209 30.1
Nn2g14270 Nelumbo nucifera HOM05D007532 ORTHO05D009483 2.7e-07 60.1 132 39.4
Duzib114G0657 Durio zibethinus HOM05D002150 ORTHO05D002191 3.5e-07 59.7 207 29.0
RcHm_v2.0_Chr1g0366491 Rosa chinensis HOM05D002150 ORTHO05D002191 3.5e-07 59.7 223 28.7
TWI38G0694 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 3.5e-07 59.7 217 28.6
Ciclev10032119m.g Citrus clementina HOM05D002150 ORTHO05D002191 4.6e-07 59.3 219 29.7
Nn5g26936 Nelumbo nucifera HOM05D002150 ORTHO05D002191 4.6e-07 59.3 222 28.4
Potri.010G206100 Populus trichocarpa HOM05D002150 ORTHO05D002191 4.6e-07 59.3 228 28.1
Thecc.09G324000 Theobroma cacao HOM05D002150 ORTHO05D002191 6.0e-07 58.9 216 29.2
Cc02_g08010 Coffea canephora HOM05D002150 ORTHO05D002191 7.8e-07 58.5 212 29.7
FAN06G2166 Fragaria x ananassa HOM05D002150 ORTHO05D002191 7.8e-07 58.5 223 28.7
Phvul.008G012900 Phaseolus vulgaris HOM05D002150 ORTHO05D002191 7.8e-07 58.5 211 29.4
Sopen05g033010 Solanum pennellii HOM05D002150 ORTHO05D002191 7.8e-07 58.5 213 31.0
Duzib106G0156 Durio zibethinus HOM05D002150 ORTHO05D002191 1.0e-06 58.2 206 27.7
FAN03G0145 Fragaria x ananassa HOM05D002150 ORTHO05D002191 1.0e-06 58.2 215 28.4
Glyma.18G289200 Glycine max HOM05D002150 ORTHO05D002191 1.0e-06 58.2 211 28.9
PGR142G1450 Punica granatum HOM05D002150 ORTHO05D002191 1.3e-06 57.8 223 31.8
ClCG09G019970 Citrullus lanatus HOM05D002150 ORTHO05D002191 1.7e-06 57.4 216 26.9
QL01p032435 Quercus lobata HOM05D002150 ORTHO05D002191 1.7e-06 57.4 210 30.0
Carub.0003s1096 Capsella rubella HOM05D014261 ORTHO05D016579 2.3e-06 57.0 146 37.0
MBI05_g06551_MAGBIO Magnolia biondii HOM05D002150 ORTHO05D002191 2.3e-06 57.0 196 30.1
Peaxi162Scf00015g00142 Petunia axillaris HOM05D002150 ORTHO05D002191 2.3e-06 57.0 198 30.8
MELO3C021655.2 Cucumis melo HOM05D002150 ORTHO05D002191 3.0e-06 56.6 216 27.3
Lalb_Chr02g0154541 Lupinus albus HOM05D007532 ORTHO05D009483 3.0e-06 56.6 145 35.9
Solyc05g054530.1 Solanum lycopersicum HOM05D002150 ORTHO05D002191 3.0e-06 56.6 214 30.4
ECA238G3924 Erigeron canadensis HOM05D002150 ORTHO05D002191 3.9e-06 56.2 152 36.8
Lj1g0013000 Lotus japonicus HOM05D002150 ORTHO05D002191 3.9e-06 56.2 216 25.5
VMungo1383G0536 Vigna mungo HOM05D002150 ORTHO05D002191 5.1e-06 55.8 216 28.2
Cfa001494 Carpinus fangiana HOM05D002150 ORTHO05D002191 6.6e-06 55.5 227 26.4
CsaV3_5G026480 Cucumis sativus L. HOM05D002150 ORTHO05D002191 6.6e-06 55.5 216 27.3
Potri.008G054400 Populus trichocarpa HOM05D002150 ORTHO05D002191 6.6e-06 55.5 227 27.3
Thhalv10022040m.g Eutrema salsugineum HOM05D014261 ORTHO05D016579 8.6e-06 55.1 203 31.0
HanXRQChr07g0201131 Helianthus annuus HOM05D002150 ORTHO05D002191 8.6e-06 55.1 216 31.0
Sed0020416 Sechium edule HOM05D002150 ORTHO05D002191 8.6e-06 55.1 216 26.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 8.6e-06 55.1 200 31.0


User provided reference genes

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