Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 5.7e-86 320.9 158 100.0
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 1.1e-78 296.6 158 91.1
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 7.4e-78 293.9 158 91.1
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 3.0e-71 271.9 158 81.0
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 3.0e-71 271.9 158 82.3
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 6.7e-71 270.8 158 82.9
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 6.7e-71 270.8 158 82.3
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.5e-70 269.6 158 82.9
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 4.3e-70 268.1 158 81.0
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.7e-69 266.2 158 81.6
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 2.2e-69 265.8 149 81.9
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 6.3e-69 264.2 150 84.7
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 6.3e-69 264.2 156 78.2
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.4e-68 263.1 149 81.2
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 1.8e-68 262.7 156 78.8
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 2.4e-68 262.3 156 77.6
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 3.1e-68 261.9 158 77.2
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 4.1e-68 261.5 150 82.7
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 4.1e-68 261.5 156 78.2
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 9.1e-68 260.4 158 76.6
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 9.1e-68 260.4 158 76.6
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 9.1e-68 260.4 149 81.9
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 1.5e-67 259.6 150 83.3
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 1.5e-67 259.6 157 76.4
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 1.5e-67 259.6 157 76.4
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 3.4e-67 258.5 150 81.3
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.3e-66 256.5 150 81.3
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.7e-66 256.1 151 80.8
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.7e-66 256.1 154 76.0
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 2.2e-66 255.8 150 80.0
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 2.9e-66 255.4 158 75.3
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 3.8e-66 255.0 158 74.7
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 6.5e-66 254.2 158 75.3
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 6.5e-66 254.2 158 77.2
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 6.5e-66 254.2 158 76.6
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 6.5e-66 254.2 158 76.6
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 1.1e-65 253.4 158 75.3
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.4e-65 253.1 149 77.9
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.9e-65 252.7 150 77.3
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.9e-65 252.7 158 74.7
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 2.5e-65 252.3 152 75.0
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 2.5e-65 252.3 156 75.0
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 7.2e-65 250.8 150 75.3
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 7.2e-65 250.8 158 75.9
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 7.2e-65 250.8 158 75.3
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 9.4e-65 250.4 150 80.0
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 9.4e-65 250.4 156 75.6
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 1.2e-64 250.0 158 74.7
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.2e-64 250.0 150 79.3
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.2e-64 250.0 150 75.3
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 2.1e-64 249.2 158 73.4
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.1e-64 249.2 158 72.2
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.7e-64 248.8 149 77.2
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 4.7e-64 248.1 158 72.8
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 4.7e-64 248.1 150 74.7
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 6.1e-64 247.7 150 78.7
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 1.4e-63 246.5 156 74.4
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.8e-63 246.1 150 78.0
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 1.8e-63 246.1 150 74.7
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 3.0e-63 245.4 158 73.4
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 5.1e-63 244.6 151 73.5
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 5.1e-63 244.6 149 76.5
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 8.8e-63 243.8 158 72.8
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 2.6e-62 242.3 146 76.0
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 2.6e-62 242.3 144 77.8
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 3.3e-62 241.9 158 72.2
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 4.4e-62 241.5 155 71.6
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 4.4e-62 241.5 153 74.5
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 9.7e-62 240.4 144 78.5
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 1.3e-61 240.0 145 75.2
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 1.3e-61 240.0 155 71.6
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 1.3e-61 240.0 148 75.7
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.7e-61 239.6 152 75.0
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 2.2e-61 239.2 148 73.6
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 2.8e-61 238.8 158 70.9
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 2.8e-61 238.8 156 73.1
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 2.8e-61 238.8 158 71.5
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 3.7e-61 238.4 152 71.1
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.4e-60 236.5 158 70.9
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 1.4e-60 236.5 150 70.0
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 3.1e-60 235.3 156 68.6
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 7.0e-60 234.2 156 71.2
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.6e-59 233.0 138 76.8
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.5e-59 231.9 149 69.8
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 7.7e-59 230.7 157 68.2
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 1.0e-58 230.3 143 73.4
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.7e-58 229.6 160 69.4
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 7.2e-57 224.2 144 72.2
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 9.4e-57 223.8 146 71.9
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 9.4e-57 223.8 146 71.2
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 8.0e-56 220.7 148 70.3
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 1.0e-55 220.3 149 69.1
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 3.0e-55 218.8 127 80.3
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 4.0e-55 218.4 154 66.9
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 5.2e-55 218.0 144 69.4
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 6.7e-55 217.6 160 66.2
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 8.8e-55 217.2 154 66.9
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.1e-54 216.9 154 66.2
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 1.5e-54 216.5 148 68.2
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 2.6e-54 215.7 148 67.6
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 3.3e-54 215.3 154 64.9
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 4.4e-54 214.9 154 64.9
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 4.4e-54 214.9 148 68.2
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 7.5e-54 214.2 148 66.9
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 2.8e-53 212.2 148 66.9
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 2.8e-53 212.2 148 66.9
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 2.4e-52 209.1 146 65.8
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 5.3e-52 208.0 154 63.6
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 9.4e-49 197.2 144 62.5
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 2.7e-48 195.7 154 62.3
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.6e-48 195.3 151 58.9
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 8.0e-48 194.1 142 60.6
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 2.3e-47 192.6 143 60.8
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.2e-45 186.0 119 74.8
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 2.2e-45 186.0 127 71.7
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 6.1e-40 167.9 99 75.8
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.4e-39 166.8 148 53.4
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 1.2e-38 163.7 103 73.8
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 5.7e-38 161.4 144 50.0
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 2.8e-37 159.1 131 54.2
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 2.4e-36 156.0 144 49.3
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 4.1e-36 155.2 146 53.4
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 2.0e-35 152.9 141 58.2
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.3e-34 150.2 145 47.6
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 4.3e-33 145.2 98 64.3
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 2.1e-32 142.9 143 52.4
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 1.3e-29 133.7 141 49.6
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.8e-28 129.8 100 59.0
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 9.2e-28 127.5 141 46.8
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 2.5e-25 119.4 142 45.1
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 2.8e-24 115.9 75 72.0
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 3.6e-24 115.5 148 44.6
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 3.7e-21 105.5 85 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 3.2e-20 102.4 84 54.8


User provided reference genes

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