Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 5.6e-36 153.7 74 100.0
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 6.2e-35 150.2 74 97.3
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.4e-34 149.1 74 95.9
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.0e-34 147.5 74 94.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.0e-34 147.5 74 94.6
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-33 145.6 74 94.6
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.5e-33 145.6 74 94.6
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.5e-33 145.6 74 94.6
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.6e-33 144.8 74 91.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 7.6e-33 143.3 74 93.2
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.8e-32 141.0 74 94.6
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.8e-32 141.0 74 94.6
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-31 139.4 74 93.2
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.4e-31 139.0 74 85.1
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-30 136.0 74 89.2
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 90.5
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 87.8
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 87.8
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 87.8
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 6.0e-30 133.7 71 88.7
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 6.0e-30 133.7 74 91.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 7.8e-30 133.3 71 90.1
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 7.8e-30 133.3 74 86.5
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.8e-30 133.3 74 86.5
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.0e-29 132.9 74 89.2
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.0e-29 132.9 74 90.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 90.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 85.1
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 1.7e-29 132.1 74 85.1
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.7e-29 132.1 71 91.5
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.7e-29 132.1 71 90.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.3e-29 131.7 74 85.1
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 3.9e-29 131.0 74 82.4
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 5.1e-29 130.6 71 85.9
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 5.1e-29 130.6 74 86.5
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.1e-28 129.4 74 85.1
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.5e-28 129.0 74 86.5
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.9e-28 128.6 74 87.8
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.9e-28 128.6 72 88.9
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 2.5e-28 128.3 74 82.4
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 3.3e-28 127.9 74 85.1
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-28 127.9 67 89.6
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-28 127.9 74 86.5
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.3e-28 127.9 72 84.7
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 4.3e-28 127.5 74 85.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 4.3e-28 127.5 74 86.5
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.3e-28 127.5 71 87.3
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 5.6e-28 127.1 71 84.5
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 5.6e-28 127.1 82 74.4
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.3e-28 126.7 74 81.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 7.3e-28 126.7 68 89.7
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 9.6e-28 126.3 75 81.3
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 9.6e-28 126.3 68 89.7
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 9.6e-28 126.3 72 84.7
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 9.6e-28 126.3 70 85.7
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.3e-27 125.9 69 87.0
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.3e-27 125.9 69 87.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 2.1e-27 125.2 74 82.4
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.1e-27 125.2 72 84.7
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.8e-27 124.8 74 83.8
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.8e-27 124.8 67 86.6
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.8e-27 124.8 72 83.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.6e-27 124.4 71 84.5
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 3.6e-27 124.4 72 83.3
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 4.8e-27 124.0 72 84.7
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 4.8e-27 124.0 74 85.1
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 4.8e-27 124.0 74 83.8
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 4.8e-27 124.0 74 78.4
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 4.8e-27 124.0 74 78.4
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.8e-27 124.0 74 83.8
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 6.2e-27 123.6 74 82.4
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 6.2e-27 123.6 74 82.4
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 6.2e-27 123.6 66 84.8
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 6.2e-27 123.6 74 82.4
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 6.2e-27 123.6 74 82.4
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 6.2e-27 123.6 74 82.4
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 8.1e-27 123.2 69 81.2
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.1e-27 123.2 74 78.4
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 8.1e-27 123.2 68 82.4
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.1e-26 122.9 72 81.9
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.1e-26 122.9 74 82.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-26 122.5 72 83.3
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.4e-26 122.5 74 79.7
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 72 83.3
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.4e-26 121.7 71 83.1
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.4e-26 121.7 71 83.1
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 2.4e-26 121.7 74 79.7
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.4e-26 121.7 72 81.9
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.1e-26 121.3 74 81.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 4.0e-26 120.9 74 77.0
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 4.0e-26 120.9 74 81.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 4.0e-26 120.9 65 84.6
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 5.3e-26 120.6 68 82.4
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 5.3e-26 120.6 65 86.2
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 6.9e-26 120.2 72 80.6
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 6.9e-26 120.2 72 80.6
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 9.0e-26 119.8 72 83.3
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.2e-25 119.4 66 83.3
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-25 119.0 72 80.6
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.5e-25 119.0 70 81.4
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.5e-25 119.0 65 84.6
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 2.0e-25 118.6 57 98.2
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.6e-25 118.2 72 77.8
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.8e-25 117.1 72 79.2
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 5.8e-25 117.1 95 64.2
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.3e-24 115.9 65 81.5
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 3.8e-24 114.4 61 83.6
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 3.8e-24 114.4 66 83.3
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.9e-24 114.0 93 63.4
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.9e-24 114.0 74 74.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 87 67.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.4e-23 112.5 67 83.6
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 2.4e-23 111.7 98 61.2
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 3.2e-23 111.3 66 80.3
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.2e-23 111.3 70 75.7
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.2e-23 111.3 96 61.5
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 3.2e-23 111.3 63 79.4
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 4.2e-23 110.9 66 80.3
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 4.2e-23 110.9 66 80.3
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 4.2e-23 110.9 66 80.3
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 4.2e-23 110.9 66 80.3
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 4.2e-23 110.9 65 81.5
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 4.2e-23 110.9 66 80.3
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 5.4e-23 110.5 66 78.8
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 7.1e-23 110.2 74 74.3
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.1e-22 108.6 73 69.9
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.1e-22 108.6 65 78.5
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 2.1e-22 108.6 61 78.7
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 2.7e-22 108.2 63 77.8
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.5e-22 107.8 62 83.9
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.5e-22 107.8 62 83.9
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.5e-22 107.8 62 83.9
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.5e-22 107.8 62 83.9
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.5e-22 107.8 62 83.9
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.5e-22 107.8 62 83.9
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.6e-22 107.5 84 69.0
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 6.0e-22 107.1 71 73.2
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 6.0e-22 107.1 71 73.2
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 7.8e-22 106.7 74 70.3
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.6e-21 103.6 53 90.6
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.5e-20 102.4 67 71.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.3e-20 100.9 58 75.9
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 5.6e-20 100.5 57 84.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.3e-19 99.4 55 81.8
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.3e-19 99.4 125 47.2
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.8e-19 98.2 65 70.8
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 4.8e-19 97.4 57 80.7
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 6.2e-19 97.1 54 83.3
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 6.2e-19 97.1 57 82.5
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 8.1e-19 96.7 64 71.9
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 8.1e-19 96.7 64 71.9
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.1e-18 96.3 57 82.5
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.1e-18 96.3 57 77.2
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.1e-18 96.3 89 55.1
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.1e-18 96.3 57 80.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.4e-18 95.9 75 64.0
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 2.4e-18 95.1 66 63.6
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 6.9e-18 93.6 57 78.9
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 9.0e-18 93.2 54 79.6
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.2e-17 92.8 51 80.4
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.2e-17 92.8 54 79.6
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.5e-17 90.9 58 72.4
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 7.6e-17 90.1 52 78.8
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-16 89.4 57 75.4
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.7e-16 89.0 63 66.7
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.1e-15 86.3 52 75.0
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.2e-15 84.3 62 56.5
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 5.4e-15 84.0 57 68.4
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 7.1e-15 83.6 67 52.2
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-13 79.7 52 75.0
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.3e-13 79.3 57 64.9
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-13 79.3 58 65.5
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.3e-13 79.3 58 65.5
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.3e-13 79.3 50 72.0
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.8e-13 79.0 40 87.5
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.8e-13 79.0 57 63.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.5e-12 75.9 65 55.4
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 9.6e-12 73.2 45 80.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.8e-11 71.6 38 81.6
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 8.1e-11 70.1 34 91.2
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 6.9e-10 67.0 35 88.6
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.6e-09 65.1 41 75.6
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 3.2e-07 58.2 51 52.9
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 3.5e-06 54.7 52 46.2


User provided reference genes

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