Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 4.2e-300 1033.9 509 100.0
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 8.0e-275 949.9 509 91.4
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-265 919.1 509 88.2
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.6e-265 918.3 506 88.9
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.6e-265 918.3 509 88.2
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.5e-252 875.9 477 89.3
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.6e-244 847.4 509 81.5
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 5.6e-244 847.4 509 80.9
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 7.3e-244 847.0 514 81.5
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.4e-242 842.0 507 80.9
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 4.4e-241 837.8 510 79.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.7e-240 835.9 509 80.2
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.1e-239 833.2 515 79.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.4e-239 832.8 514 80.2
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 7.3e-236 820.5 509 79.2
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 2.1e-235 818.9 509 78.4
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.8e-234 815.8 509 79.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 2.4e-234 815.5 509 78.4
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.5e-233 812.8 509 78.0
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 3.4e-233 811.6 509 77.8
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 7.1e-231 803.9 513 77.8
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.2e-230 803.1 509 75.8
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.2e-230 803.1 548 73.0
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 2.7e-230 802.0 509 76.8
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.3e-229 799.7 509 76.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 3.0e-229 798.5 509 75.8
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.0e-229 798.5 511 78.1
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.9e-228 795.8 514 75.9
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.9e-228 795.8 513 77.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.3e-227 793.1 504 76.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.6e-227 792.7 509 75.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.6e-227 791.6 509 76.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 8.1e-227 790.4 509 75.8
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.2e-225 786.6 509 76.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 4.5e-225 784.6 509 75.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.5e-225 784.6 509 74.9
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 7.6e-225 783.9 509 75.6
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.3e-224 783.1 508 76.4
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.7e-224 782.7 514 75.3
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.2e-224 782.3 517 74.1
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.9e-224 781.9 509 74.5
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.9e-224 781.9 514 75.1
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.9e-224 781.9 502 75.3
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.8e-224 781.6 489 78.9
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 6.4e-224 780.8 510 75.1
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 6.4e-224 780.8 510 75.1
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 8.4e-224 780.4 509 75.0
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.4e-223 779.6 509 74.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.4e-223 779.6 509 75.0
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-223 778.9 509 74.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 2.4e-223 778.9 510 75.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 7.1e-223 777.3 510 75.1
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 3.5e-222 775.0 499 76.0
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 6.0e-222 774.2 514 75.1
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-221 773.1 509 74.7
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.8e-221 772.7 513 74.1
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.3e-221 772.3 511 75.0
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.0e-221 771.9 547 70.2
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.0e-221 771.9 509 73.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 3.9e-221 771.5 509 74.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 3.9e-221 771.5 514 74.1
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 6.7e-221 770.8 476 79.0
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 6.7e-221 770.8 510 74.3
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 8.7e-221 770.4 509 75.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 8.7e-221 770.4 507 75.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-220 770.0 509 74.9
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-220 770.0 514 73.7
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.5e-220 769.6 547 70.0
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.9e-220 769.2 513 74.5
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.9e-220 769.2 472 80.3
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.5e-220 768.8 509 74.5
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 4.3e-220 768.1 511 74.6
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 9.6e-220 766.9 509 74.7
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.8e-219 765.4 474 78.5
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.7e-219 765.0 511 74.0
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 6.2e-219 764.2 513 73.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.8e-218 762.7 501 74.9
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.4e-218 762.3 601 65.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.9e-218 760.8 501 74.7
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 6.9e-218 760.8 509 73.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.0e-218 760.4 509 74.3
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.0e-217 759.2 513 72.3
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.6e-217 758.8 514 72.8
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.5e-217 758.1 509 74.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-216 756.1 513 71.9
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.1e-215 753.4 514 73.5
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.1e-215 753.4 514 72.0
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.7e-214 748.8 505 73.9
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 4.6e-214 748.0 483 76.0
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 7.9e-214 747.3 510 72.4
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-213 746.9 504 72.4
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.1e-212 743.4 527 70.0
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.6e-211 739.6 452 81.6
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.8e-211 738.0 513 71.5
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 3.1e-210 735.3 513 70.2
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.5e-208 727.6 509 72.5
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.5e-207 725.7 509 72.3
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 9.3e-207 723.8 511 69.5
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 6.0e-206 721.1 509 70.3
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.3e-205 719.9 514 69.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.3e-205 719.2 502 70.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.5e-204 715.7 567 65.8
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 9.7e-204 713.8 460 75.2
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-203 713.4 498 70.9
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.4e-202 709.9 535 68.8
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 9.0e-202 707.2 527 68.9
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.9e-199 699.5 588 62.1
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.2e-199 697.6 512 69.3
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.7e-198 695.7 510 69.8
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.0e-197 693.7 514 68.7
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.1e-196 690.3 511 67.3
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.3e-195 686.8 473 72.9
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-195 686.8 460 73.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 3.1e-194 682.2 449 75.5
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.5e-193 679.9 503 68.2
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.9e-193 677.9 528 66.7
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 7.7e-193 677.6 505 67.3
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.7e-192 676.4 510 65.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 6.5e-192 674.5 511 66.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.6e-190 669.8 513 68.6
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.3e-189 666.0 512 65.4
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 2.2e-184 649.4 509 64.6
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.2e-175 618.6 404 74.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.5e-172 610.1 404 74.3
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.0e-164 583.2 476 63.9
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.5e-159 566.2 664 49.4
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 2.1e-158 563.1 546 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 4.4e-156 555.4 521 55.3
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 9.2e-146 521.2 417 62.4
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.1e-143 514.2 453 59.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.9e-139 499.6 270 90.0
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 8.3e-139 498.0 509 54.0
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.7e-136 490.3 341 71.3
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.0e-120 436.4 273 77.7
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 9.0e-109 398.3 279 71.7
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.0e-104 383.3 214 86.9
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 9.7e-87 325.1 219 74.0
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.8e-86 323.6 248 67.7
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.2e-83 313.9 265 58.9
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.9e-80 303.1 257 59.1
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 7.2e-74 282.3 500 39.2
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.0e-67 261.9 577 30.5
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.7e-57 227.3 397 36.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 3.8e-43 180.3 135 64.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.6e-43 179.1 182 53.3
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.2e-42 176.0 121 74.4
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 2.3e-40 171.0 106 79.2
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 4.4e-39 166.8 114 66.7
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 5.9e-36 156.4 184 44.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.4e-30 136.3 247 39.3
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-29 134.8 247 38.9
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.3e-27 127.9 67 88.1
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.6e-25 120.6 63 92.1
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.6e-17 94.0 166 28.9
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 3.6e-17 94.0 73 65.8
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 8.9e-16 89.4 114 44.7
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.9e-13 81.6 61 68.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 7.3e-10 69.7 240 25.4
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 7.3e-10 69.7 86 44.2
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.8e-08 63.2 36 83.3
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.5e-07 62.0 139 28.1
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.0e-07 61.6 36 75.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.4e-07 60.5 74 44.6
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.9e-07 59.3 105 40.0


User provided reference genes

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