Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 4.3e-144 514.6 257 100.0
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 1.5e-123 446.4 259 87.6
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 4.2e-115 418.3 261 81.6
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 1.0e-113 413.7 262 81.3
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 6.8e-113 411.0 261 80.8
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 1.2e-109 400.2 266 80.8
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 9.2e-102 374.0 263 75.3
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 1.2e-101 373.6 265 76.2
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 1.7e-100 369.8 259 76.1
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 1.1e-99 367.1 261 73.6
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 1.5e-99 366.7 258 74.4
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 5.2e-97 358.2 247 74.5
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 1.5e-96 356.7 262 72.5
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 1.5e-96 356.7 271 71.6
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 2.0e-96 356.3 266 71.8
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 2.0e-96 356.3 219 80.4
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 2.6e-96 355.9 258 70.5
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 1.3e-95 353.6 277 70.0
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 2.2e-95 352.8 260 71.5
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 3.7e-95 352.1 265 71.7
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 1.4e-94 350.1 187 89.3
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 1.8e-94 349.7 266 71.1
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 2.4e-94 349.4 211 82.0
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 5.4e-94 348.2 178 92.7
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 5.4e-94 348.2 181 91.7
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 1.2e-93 347.1 250 72.4
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 1.6e-93 346.7 259 69.5
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 3.5e-93 345.5 271 68.3
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 3.5e-93 345.5 271 68.3
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 4.6e-93 345.1 257 71.2
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 1.0e-92 344.0 270 69.3
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 6.6e-92 341.3 254 70.5
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 8.6e-92 340.9 245 73.5
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 1.1e-91 340.5 274 66.8
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 1.5e-91 340.1 203 82.8
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 2.5e-91 339.3 269 70.6
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 4.3e-91 338.6 202 81.2
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 2.8e-90 335.9 267 68.5
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 1.0e-89 334.0 206 79.6
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 1.8e-89 333.2 205 78.0
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 3.1e-89 332.4 181 89.0
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 4.0e-89 332.0 198 80.3
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 4.0e-89 332.0 258 69.4
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 1.2e-88 330.5 275 64.4
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 3.4e-88 328.9 254 68.1
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 1.7e-87 326.6 189 82.0
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 1.7e-87 326.6 262 67.6
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 3.7e-87 325.5 255 67.8
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 4.9e-87 325.1 194 80.9
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 4.9e-87 325.1 265 67.9
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 8.3e-87 324.3 255 67.5
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 2.4e-86 322.8 259 65.3
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 2.4e-86 322.8 257 66.9
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 3.2e-86 322.4 259 66.8
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 3.2e-86 322.4 255 67.5
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 3.2e-86 322.4 264 65.9
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 5.4e-86 321.6 253 67.6
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 5.4e-86 321.6 298 62.1
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 2.0e-85 319.7 258 65.5
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 2.0e-85 319.7 253 66.8
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 2.0e-85 319.7 260 66.5
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 2.7e-85 319.3 256 68.0
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 4.6e-85 318.5 247 69.6
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 7.8e-85 317.8 180 85.0
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 1.3e-84 317.0 254 65.7
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 3.9e-84 315.5 254 64.6
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 1.5e-83 313.5 178 83.1
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 3.3e-83 312.4 221 71.9
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 7.3e-83 311.2 250 65.6
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 1.2e-82 310.5 247 66.0
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 2.1e-82 309.7 216 71.3
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 3.6e-82 308.9 211 73.5
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 4.7e-82 308.5 226 73.5
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 4.7e-82 308.5 179 81.6
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 2.4e-78 296.2 273 61.9
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 3.2e-78 295.8 205 67.8
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 9.2e-78 294.3 264 62.9
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 3.5e-77 292.4 192 75.5
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 4.6e-77 292.0 251 63.3
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 6.0e-77 291.6 190 76.8
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 7.8e-77 291.2 200 73.5
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 8.6e-76 287.7 254 62.2
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 2.3e-73 279.6 276 56.9
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 1.6e-69 266.9 192 69.3
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 8.6e-68 261.2 203 63.1
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 1.6e-66 256.9 181 72.9
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 4.7e-66 255.4 177 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 1.5e-64 250.4 181 69.1
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 1.7e-63 246.9 145 84.8
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.9e-63 246.1 127 92.1
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 3.9e-60 235.7 123 92.7
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 5.4e-54 215.3 205 59.5
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 1.0e-52 211.1 172 64.5
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 6.4e-47 191.8 117 76.9
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 4.6e-45 185.7 179 55.3
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 4.8e-42 175.6 94 86.2
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 3.7e-34 149.4 129 61.2
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 6.5e-31 138.7 75 86.7
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 1.5e-27 127.5 65 90.8
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 2.3e-20 103.6 58 84.5
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 8.5e-15 85.1 91 54.9


User provided reference genes

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