Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G050900 Theobroma cacao HOM05D007476 ORTHO05D006998 2.6e-84 315.8 222 100.0
Duzib093G1301 Durio zibethinus HOM05D007476 ORTHO05D006998 4.5e-57 225.3 221 79.2
Gohir.D04G116600 Gossypium hirsutum HOM05D007476 ORTHO05D006998 2.9e-51 206.1 222 70.7
Gorai.009G421500 Gossypium raimondii HOM05D007476 ORTHO05D006998 8.3e-51 204.5 222 70.3
Gohir.A04G077400 Gossypium hirsutum HOM05D007476 ORTHO05D006998 1.0e-45 187.6 222 66.7
Duzib128G0759 Durio zibethinus HOM05D007476 ORTHO05D006998 3.1e-45 186.0 219 65.8
Gohir.A13G076000 Gossypium hirsutum HOM05D007476 ORTHO05D006998 2.2e-43 179.9 222 61.3
Gorai.001G248500 Gossypium raimondii HOM05D007476 ORTHO05D006998 4.9e-43 178.7 222 60.8
Gohir.A09G160400 Gossypium hirsutum HOM05D007476 ORTHO05D006998 1.8e-37 160.2 169 63.9
Gohir.D13G096300 Gossypium hirsutum HOM05D007476 ORTHO05D006998 9.8e-36 154.5 222 57.7
Gorai.006G177500 Gossypium raimondii HOM05D007476 ORTHO05D006998 1.4e-29 134.0 106 71.7
COL.COLO4_10302 Corchorus olitorius HOM05D007476 ORTHO05D006998 4.0e-29 132.5 133 72.2
Prupe.6G244900 Prunus persica HOM05D007476 ORTHO05D006998 3.8e-27 125.9 206 53.9
Cfa017474 Carpinus fangiana HOM05D007476 ORTHO05D006998 4.1e-26 122.5 204 43.6
RcHm_v2.0_Chr3g0468131 Rosa chinensis HOM05D007476 ORTHO05D006998 1.6e-25 120.6 194 51.0
Atru.chr8.2515 Acer truncatum HOM05D007476 ORTHO05D006998 3.9e-24 115.9 256 43.4
Ciclev10012743m.g Citrus clementina HOM05D007476 ORTHO05D006998 8.1e-22 108.2 195 53.3
QL07p045831 Quercus lobata HOM05D007476 ORTHO05D006998 1.5e-20 104.0 145 57.2
Gohir.D09G156000 Gossypium hirsutum HOM05D007476 ORTHO05D006998 4.4e-20 102.4 85 68.2
Haze_20680 Corylus avellana HOM05D007476 ORTHO05D006998 9.9e-20 101.3 276 37.0
GSVIVG01025570001 Vitis vinifera HOM05D007476 ORTHO05D006998 1.1e-18 97.8 120 67.5
Dinv37238 Davidia involucrata HOM05D007476 ORTHO05D006998 1.4e-18 97.4 152 57.9
Sopen10g035340 Solanum pennellii HOM05D007476 ORTHO05D006998 1.2e-17 94.4 196 47.4
Dinv35685 Davidia involucrata HOM05D007476 ORTHO05D006998 1.6e-17 94.0 214 49.1
VMungo1383G2744 Vigna mungo HOM05D007476 ORTHO05D006998 3.5e-17 92.8 188 52.7
Solyc10g085970.3 Solanum lycopersicum HOM05D007476 ORTHO05D006998 1.0e-16 91.3 185 47.0
MD12G1129600 Malus domestica HOM05D007476 ORTHO05D006998 1.3e-16 90.9 200 45.0
CiPaw.10G138800 Carya illinoinensis HOM05D007476 ORTHO05D006998 1.7e-16 90.5 210 49.5
Eucgr.A01204 Eucalyptus grandis HOM05D007476 ORTHO05D006998 3.0e-16 89.7 143 59.4
FAN02G2102 Fragaria x ananassa HOM05D007476 ORTHO05D006998 6.6e-16 88.6 177 48.0
FAN05G2812 Fragaria x ananassa HOM05D007476 ORTHO05D006998 6.6e-16 88.6 176 50.0
EL10Ac7g17261 Beta vulgaris HOM05D007476 ORTHO05D006998 1.5e-15 87.4 160 51.9
CiPaw.09G184800 Carya illinoinensis HOM05D007476 ORTHO05D006998 1.5e-15 87.4 237 43.9
Eucgr.K03190 Eucalyptus grandis HOM05D007476 ORTHO05D006998 5.6e-15 85.5 146 57.5
CANSAT80G1705 Cannabis sativa HOM05D007476 ORTHO05D006998 2.8e-14 83.2 207 38.2
COL.COLO4_03678 Corchorus olitorius HOM05D001978 ORTHO05D003036 3.6e-14 82.8 79 59.5
MD04G1111200 Malus domestica HOM05D007476 ORTHO05D006998 3.6e-14 82.8 119 58.8
THA.LOC104823246 Tarenaya hassleriana HOM05D010138 ORTHO05D006998 3.6e-14 82.8 192 44.8
AUR62040509 Chenopodium quinoa HOM05D007476 ORTHO05D006998 6.2e-14 82.0 195 48.7
Potri.016G082900 Populus trichocarpa HOM05D007476 ORTHO05D006998 1.1e-13 81.3 209 41.6
Hund12067 Selenicereus undatus HOM05D007476 ORTHO05D006998 1.1e-13 81.3 237 35.4
arahy.Tifrunner.gnm1.ann1.UZX3W4 Arachis hypogaea HOM05D007476 ORTHO05D006998 1.4e-13 80.9 173 52.0
Nitab4.5_0000754g0030 Nicotiana tabacum HOM05D007476 ORTHO05D006998 2.4e-13 80.1 192 49.0
Hma1.2p1_0111F.1_g053570 Hydrangea macrophylla HOM05D007476 ORTHO05D006998 5.3e-13 79.0 200 47.0
Actinidia05282 Actinidia chinensis HOM05D007476 ORTHO05D006998 9.0e-13 78.2 197 49.7
Phvul.001G173200 Phaseolus vulgaris HOM05D007476 ORTHO05D006998 9.0e-13 78.2 191 45.5
TWI74G1466 Tripterygium wilfordii HOM05D007476 ORTHO05D006998 9.0e-13 78.2 202 47.5
ECA238G2167 Erigeron canadensis HOM05D007476 ORTHO05D006998 2.0e-12 77.0 192 48.4
Carub.0006s0153 Capsella rubella HOM05D010138 ORTHO05D006998 2.6e-12 76.6 149 54.4
Cc06_g03350 Coffea canephora HOM05D007476 ORTHO05D006998 2.6e-12 76.6 199 47.2
Sc01g0003710 Simmondsia chinensis HOM05D007476 ORTHO05D006998 2.6e-12 76.6 203 47.3
vmacro20080 Vaccinium macrocarpon HOM05D007476 ORTHO05D006998 3.4e-12 76.3 225 46.7
PGR004G1949 Punica granatum HOM05D007476 ORTHO05D006998 4.5e-12 75.9 193 47.2
Sc20g0004220 Simmondsia chinensis HOM05D007476 ORTHO05D006998 2.2e-11 73.6 163 54.6
HanXRQChr14g0453431 Helianthus annuus HOM05D007476 ORTHO05D006998 2.9e-11 73.2 146 52.7
CSS0046323 Camellia sinensis var. sinensis HOM05D007476 ORTHO05D006998 3.8e-11 72.8 195 48.2
Oeu026075.1 Olea europaea HOM05D007476 ORTHO05D006998 3.8e-11 72.8 199 44.2
Potri.006G134000 Populus trichocarpa HOM05D007476 ORTHO05D006998 1.4e-10 70.9 140 51.4
arahy.Tifrunner.gnm1.ann1.KRM1EW Arachis hypogaea HOM05D007476 ORTHO05D006998 1.9e-10 70.5 174 49.4
PGSC0003DMG400002015 Solanum tuberosum HOM05D007476 ORTHO05D006998 1.9e-10 70.5 191 45.0
Migut.J00397 Erythranthe guttata HOM05D020465 ORTHO05D006998 3.2e-10 69.7 183 44.3
Nitab4.5_0002073g0060 Nicotiana tabacum HOM05D000217 ORTHO05D000121 3.2e-10 69.7 186 48.9
FAN14G0122 Fragaria x ananassa HOM05D007476 ORTHO05D006998 5.4e-10 68.9 193 44.0
Lalb_Chr20g0113001 Lupinus albus HOM05D007476 ORTHO05D006998 5.4e-10 68.9 194 39.7
Solyc09g007090.4 Solanum lycopersicum HOM05D007476 ORTHO05D006998 5.4e-10 68.9 195 44.6
Sopen09g001950 Solanum pennellii HOM05D007476 ORTHO05D006998 5.4e-10 68.9 196 44.9
MELO3C003078.2 Cucumis melo HOM05D023083 ORTHO05D006998 7.1e-10 68.6 189 43.9
FvH4_6g14930 Fragaria vesca HOM05D007476 ORTHO05D006998 7.1e-10 68.6 177 46.9
TWI53G1272 Tripterygium wilfordii HOM05D007476 ORTHO05D006998 7.1e-10 68.6 124 50.8
HanXRQChr07g0195971 Helianthus annuus HOM05D007476 ORTHO05D006998 1.2e-09 67.8 69 58.0
CsaV3_4G024450 Cucumis sativus L. HOM05D023083 ORTHO05D006998 1.6e-09 67.4 189 44.4
Peaxi162Scf00597g00826 Petunia axillaris HOM05D007476 ORTHO05D006998 1.6e-09 67.4 192 46.9
ClCG04G008710 Citrullus lanatus HOM05D023083 ORTHO05D006998 2.1e-09 67.0 189 45.5
CDE02G0064 Ceratophyllum demersum HOM05D007476 ORTHO05D006998 2.7e-09 66.6 85 65.9
AUR62042912 Chenopodium quinoa HOM05D007476 ORTHO05D006998 2.7e-09 66.6 196 46.4
Nn2g12939 Nelumbo nucifera HOM05D007476 ORTHO05D006998 2.7e-09 66.6 199 45.2
Ah.08g212030 Amaranthus hybridus HOM05D007476 ORTHO05D006998 4.6e-09 65.9 205 46.8
PGSC0003DMG400017597 Solanum tuberosum HOM05D000217 ORTHO05D000121 4.6e-09 65.9 165 43.6
BcaB05g21871 Brassica carinata HOM05D010138 ORTHO05D006998 7.9e-09 65.1 192 43.2
CARHR210610 Cardamine hirsuta HOM05D010138 ORTHO05D006998 1.3e-08 64.3 151 47.7
Lj1g0005274 Lotus japonicus HOM05D007476 ORTHO05D006998 1.3e-08 64.3 139 52.5
PSO384G1224 Papaver somniferum HOM05D052811 ORTHO05D006998 1.3e-08 64.3 165 46.1
PSO699G0016 Papaver somniferum HOM05D052811 ORTHO05D006998 1.3e-08 64.3 165 46.1
TAR375G0914 Trochodendron aralioides HOM05D000137 ORTHO05D000382 1.3e-08 64.3 154 49.4
AT5G02770 Arabidopsis thaliana HOM05D010138 ORTHO05D006998 1.8e-08 63.9 138 42.0
AL6G12020 Arabidopsis lyrata HOM05D010138 ORTHO05D006998 2.3e-08 63.5 199 46.7
BraA02t04729Z Brassica rapa HOM05D010138 ORTHO05D006998 2.3e-08 63.5 156 46.8
Thhalv10014656m.g Eutrema salsugineum HOM05D010138 ORTHO05D006998 5.1e-08 62.4 108 44.4
Lalb_Chr25g0289331 Lupinus albus HOM05D007476 ORTHO05D006998 5.1e-08 62.4 160 44.4
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 6.7e-08 62.0 62 58.1
Glyma.03G176200 Glycine max HOM05D007476 ORTHO05D006998 6.7e-08 62.0 195 43.6
FAN09G1326 Fragaria x ananassa HOM05D007476 ORTHO05D006998 1.5e-07 60.8 174 44.3
CDE09G0878 Ceratophyllum demersum HOM05D007476 ORTHO05D006998 1.9e-07 60.5 95 60.0
THA.LOC104805331 Tarenaya hassleriana HOM05D007476 ORTHO05D006998 1.9e-07 60.5 155 52.3
DCAR_020869 Daucus carota HOM05D007476 ORTHO05D006998 4.3e-07 59.3 44 68.2
Aqoxy4G03120 Aquilegia oxysepala HOM05D007476 ORTHO05D006998 1.6e-06 57.4 132 53.8
ClCG10G020700 Citrullus lanatus HOM05D029433 ORTHO05D028973 1.6e-06 57.4 84 52.4
Glyma.19G176700 Glycine max HOM05D007476 ORTHO05D006998 1.6e-06 57.4 194 39.7
Oeu060068.2 Olea europaea HOM05D007476 ORTHO05D025237 1.6e-06 57.4 230 34.3
Migut.L01648 Erythranthe guttata HOM05D020465 ORTHO05D006998 4.8e-06 55.8 167 44.3
Nn2g10585 Nelumbo nucifera HOM05D007476 ORTHO05D006998 4.8e-06 55.8 183 45.4
Sabra06G0105300 Salix brachista HOM05D007476 ORTHO05D006998 4.8e-06 55.8 119 37.8
BcaC06g34403 Brassica carinata HOM05D001366 ORTHO05D003220 8.1e-06 55.1 43 67.4


User provided reference genes

Program Settings