Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 0.0e+00 1369.8 695 100.0
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 8.9e-301 1036.6 687 78.0
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 9.4e-226 787.3 603 68.8
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 2.9e-134 483.4 398 62.6
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 6.5e-134 482.3 468 58.3
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.4e-133 481.1 732 41.9
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 2.5e-133 480.3 494 53.6
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 4.2e-133 479.6 400 62.0
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 4.2e-133 479.6 400 62.0
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 4.2e-133 479.6 579 51.6
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 9.3e-133 478.4 456 56.6
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.6e-132 477.6 535 51.0
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 3.5e-132 476.5 457 55.8
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.0e-131 474.9 531 51.4
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.8e-131 474.2 432 58.3
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 1.8e-131 474.2 516 52.9
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 2.3e-131 473.8 481 54.3
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 5.1e-131 472.6 489 54.4
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 8.7e-131 471.9 433 57.5
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 1.9e-130 470.7 517 50.9
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 3.3e-130 469.9 533 51.2
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 5.7e-130 469.2 538 50.0
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 7.4e-130 468.8 461 54.7
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 9.6e-130 468.4 417 58.0
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 9.6e-130 468.4 483 54.5
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.3e-129 468.0 401 60.1
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 1.3e-129 468.0 399 60.2
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.6e-129 467.6 451 55.9
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 2.1e-129 467.2 494 51.4
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 4.8e-129 466.1 446 56.1
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.1e-128 464.9 514 51.4
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 3.1e-128 463.4 480 52.7
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 3.1e-128 463.4 440 56.8
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 6.9e-128 462.2 450 55.8
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 9.0e-128 461.8 479 52.4
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 9.0e-128 461.8 452 54.6
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 1.5e-127 461.1 569 47.5
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.0e-127 460.7 455 54.9
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 2.0e-127 460.7 460 53.7
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 2.6e-127 460.3 486 53.1
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 2.6e-127 460.3 467 54.0
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 2.6e-127 460.3 455 53.4
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.4e-127 459.9 495 52.3
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 4.5e-127 459.5 448 55.1
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.6e-127 458.8 495 52.1
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 7.6e-127 458.8 453 54.7
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.3e-126 458.0 508 51.4
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 1.7e-126 457.6 534 49.1
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.9e-126 456.8 438 55.9
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 2.9e-126 456.8 480 52.7
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 2.9e-126 456.8 432 56.0
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 3.8e-126 456.4 392 61.0
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 3.8e-126 456.4 453 54.1
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 3.8e-126 456.4 432 56.0
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 5.0e-126 456.1 514 51.0
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 6.5e-126 455.7 499 51.5
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 6.5e-126 455.7 519 48.9
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 6.5e-126 455.7 452 54.4
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 6.5e-126 455.7 557 47.9
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 6.5e-126 455.7 464 53.9
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 8.4e-126 455.3 418 57.2
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.9e-125 454.1 453 54.5
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 1.9e-125 454.1 487 51.5
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 2.5e-125 453.8 496 50.8
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.2e-125 453.4 480 50.4
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.2e-125 453.4 400 58.8
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 3.2e-125 453.4 400 58.8
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 5.5e-125 452.6 400 58.2
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 7.2e-125 452.2 450 55.6
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 7.2e-125 452.2 391 58.6
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 7.2e-125 452.2 433 55.4
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 9.3e-125 451.8 438 55.0
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 9.3e-125 451.8 391 58.3
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.2e-124 451.4 557 47.6
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.6e-124 451.1 505 50.9
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 2.1e-124 450.7 526 49.8
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 2.1e-124 450.7 507 50.1
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 2.1e-124 450.7 482 50.8
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 2.7e-124 450.3 566 47.2
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.7e-124 450.3 457 52.7
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 2.7e-124 450.3 454 54.4
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.6e-124 449.5 454 54.4
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 6.1e-124 449.1 436 54.8
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 7.9e-124 448.7 561 47.4
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.0e-123 448.4 391 58.1
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 1.0e-123 448.4 391 58.1
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 1.0e-123 448.4 510 50.0
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 1.3e-123 448.0 378 59.8
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 1.8e-123 447.6 455 53.8
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 1.8e-123 447.6 391 57.8
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 2.3e-123 447.2 399 58.9
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 3.9e-123 446.4 431 55.9
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 6.7e-123 445.7 391 57.8
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 6.7e-123 445.7 397 57.9
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 6.7e-123 445.7 474 52.1
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 1.9e-122 444.1 433 54.5
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 1.9e-122 444.1 478 51.5
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 2.8e-121 440.3 632 43.5
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 3.7e-121 439.9 535 47.5
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 6.3e-121 439.1 436 53.9
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 6.3e-121 439.1 483 50.1
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 6.3e-121 439.1 403 57.3
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.1e-120 438.3 478 50.4
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 1.4e-120 438.0 377 58.1
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 1.8e-120 437.6 484 50.4
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 6.9e-120 435.6 561 45.5
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 1.2e-119 434.9 438 53.7
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.6e-119 433.7 429 55.9
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 3.4e-119 433.3 483 49.1
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 1.3e-118 431.4 478 49.4
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 1.7e-118 431.0 442 51.4
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.7e-118 431.0 419 54.7
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.9e-117 427.6 561 45.8
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.9e-117 427.6 583 42.7
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 2.5e-117 427.2 481 49.7
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 7.2e-117 425.6 536 46.1
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 2.1e-116 424.1 491 48.9
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 2.7e-116 423.7 399 55.9
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.6e-116 423.3 574 48.3
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 4.6e-116 422.9 385 55.3
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.0e-115 421.8 394 56.1
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 2.3e-115 420.6 553 45.0
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 5.1e-115 419.5 553 44.8
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 8.8e-115 418.7 403 56.1
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 8.8e-115 418.7 563 45.3
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 2.0e-114 417.5 493 46.5
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 3.3e-114 416.8 376 55.3
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 5.7e-114 416.0 553 45.2
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 3.7e-113 413.3 553 45.2
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 8.2e-113 412.1 553 44.8
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 6.9e-112 409.1 396 54.5
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 4.5e-111 406.4 433 52.2
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 5.5e-109 399.4 494 47.6
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 1.2e-108 398.3 445 50.8
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 3.9e-107 393.3 379 53.0
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 4.8e-105 386.3 428 49.1
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 2.4e-104 384.0 369 53.7
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 2.2e-102 377.5 715 36.1
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 2.9e-102 377.1 728 36.5
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.5e-102 375.9 392 52.0
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 1.5e-101 374.8 433 48.7
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 3.6e-100 370.2 342 55.6
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 6.1e-100 369.4 492 43.7
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 9.7e-98 362.1 376 49.5
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 9.7e-98 362.1 376 49.5
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 1.8e-96 357.8 404 49.0
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 2.4e-96 357.5 315 56.2
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 5.0e-94 349.7 488 42.4
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 5.0e-86 323.2 274 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 1.1e-85 322.0 524 39.9
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.2e-76 292.0 219 63.5
CBR_g17672 Chara braunii HOM05D002855 ORTHO05D004406 2.6e-74 284.3 422 41.9
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 4.4e-74 283.5 219 60.7
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 1.7e-73 281.6 394 42.9
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 5.2e-67 260.0 231 55.4
Dinv37234 Davidia involucrata HOM05D002855 ORTHO05D029235 8.1e-60 236.1 273 51.6
FvH4_6g14850 Fragaria vesca HOM05D002855 ORTHO05D004406 1.9e-53 214.9 209 55.0
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 9.5e-53 212.6 209 54.5
RcHm_v2.0_Chr3g0468071 Rosa chinensis HOM05D000001 ORTHO05D009676 1.2e-52 212.2 193 59.1
PGSC0003DMG402010988 Solanum tuberosum HOM05D002855 ORTHO05D004406 5.4e-48 196.8 171 57.9
Sopen10g033910 Solanum pennellii HOM05D002855 ORTHO05D004406 7.1e-48 196.4 171 57.9
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 2.1e-47 194.9 213 49.3
Sopen06g015690 Solanum pennellii HOM05D002855 ORTHO05D004406 2.7e-47 194.5 171 56.7
FvH4_6g14860 Fragaria vesca HOM05D002855 ORTHO05D035540 6.0e-47 193.4 192 52.1
Sopen06g015720 Solanum pennellii HOM05D002855 ORTHO05D004406 7.8e-47 193.0 167 58.7
Sopen10g033890 Solanum pennellii HOM05D002855 ORTHO05D004406 1.7e-46 191.8 194 51.5
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 6.6e-46 189.9 226 47.8
Sopen10g033920 Solanum pennellii HOM05D002855 ORTHO05D004406 6.6e-46 189.9 175 54.3
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 8.6e-46 189.5 236 47.9
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 3.3e-45 187.6 378 36.0
SMO118G0514 Selaginella moellendorffii HOM05D002855 ORTHO05D004406 4.3e-45 187.2 166 54.8
FAN09G2794 Fragaria x ananassa HOM05D002855 ORTHO05D035540 7.3e-45 186.4 192 51.6
Sopen06g015700 Solanum pennellii HOM05D002855 ORTHO05D004406 5.2e-43 180.3 174 52.9
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 1.4e-40 172.2 217 44.7
Sopen10g033900 Solanum pennellii HOM05D002855 ORTHO05D004406 2.4e-40 171.4 140 58.6
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 3.9e-38 164.1 266 38.3
Dinv37233 Davidia involucrata HOM05D002855 ORTHO05D004406 7.3e-37 159.8 106 71.7
Sopen06g015670 Solanum pennellii HOM05D002855 ORTHO05D004406 3.4e-34 151.0 147 52.4
Sopen06g015680 Solanum pennellii HOM05D002855 ORTHO05D004406 3.4e-34 151.0 147 52.4
Lj3P975T65 Lonicera japonica HOM05D002855 ORTHO05D029235 2.5e-29 134.8 140 48.6
vmacro14495 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.3e-25 122.5 281 33.8
unitig_736.g22426 Utricularia gibba HOM05D002855 ORTHO05D004406 3.2e-24 117.9 205 38.5
Lj2E1045T0 Lonicera japonica HOM05D002855 ORTHO05D004406 5.5e-24 117.1 72 73.6
Actinidia03767 Actinidia chinensis HOM05D002855 ORTHO05D004406 7.1e-24 116.7 124 50.8
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 4.2e-16 90.9 205 30.7
Lalb_Chr14g0374891 Lupinus albus HOM05D002855 ORTHO05D004406 1.2e-10 72.8 211 30.8


User provided reference genes

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