Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.8e-210 734.6 362 100.0
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.4e-193 679.5 362 92.0
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 4.3e-190 667.9 362 92.0
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.8e-188 662.5 363 89.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.5e-187 657.9 364 89.3
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.2e-185 651.7 363 88.4
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.3e-165 586.6 362 80.9
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.7e-165 586.3 365 81.9
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.1e-164 583.6 368 80.7
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.1e-164 583.6 311 88.7
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 5.3e-164 581.3 362 77.9
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 6.9e-164 580.9 368 78.3
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 9.1e-164 580.5 308 89.6
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.5e-163 579.7 329 85.1
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 3.4e-163 578.6 371 76.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 4.5e-163 578.2 370 78.6
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 5.9e-163 577.8 370 78.1
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 7.7e-163 577.4 353 79.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.2e-162 575.9 365 78.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 3.8e-162 575.1 369 76.7
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 6.5e-162 574.3 368 78.0
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.1e-161 573.5 322 84.8
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.4e-161 573.2 361 76.5
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.4e-161 573.2 370 77.0
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.9e-161 572.8 364 75.8
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.5e-161 572.4 371 78.7
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.2e-161 572.0 366 77.6
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 3.2e-161 572.0 315 87.0
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 7.2e-161 570.9 362 76.5
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 7.2e-161 570.9 368 77.4
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 3.6e-160 568.5 366 77.6
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 4.7e-160 568.2 362 77.3
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 7.9e-160 567.4 334 81.7
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.8e-159 566.2 365 76.7
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.9e-159 565.1 323 82.7
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 5.2e-159 564.7 386 74.9
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.1e-158 563.5 364 75.3
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.1e-158 563.5 362 75.7
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-158 563.1 363 76.0
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 2.0e-158 562.8 363 76.0
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 5.7e-158 561.2 365 77.8
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 5.7e-158 561.2 365 76.7
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 7.4e-158 560.8 364 76.4
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 7.4e-158 560.8 363 76.3
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.3e-157 560.1 365 75.9
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.2e-157 559.3 365 75.3
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 3.7e-157 558.5 377 73.7
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 4.8e-157 558.1 363 75.5
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.1e-156 557.0 369 76.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.8e-156 556.2 362 74.9
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 3.1e-156 555.4 375 74.4
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 4.1e-156 555.1 363 75.2
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-155 553.5 365 74.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.6e-155 553.1 369 72.9
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 2.0e-155 552.7 320 80.0
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.6e-155 552.4 370 75.7
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 2.6e-155 552.4 353 77.9
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.5e-155 552.0 367 74.9
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 3.5e-155 552.0 363 75.2
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 4.5e-155 551.6 365 74.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 7.7e-155 550.8 361 75.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.7e-155 550.8 368 76.4
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.3e-154 550.1 321 81.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.2e-154 549.3 363 74.9
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 5.0e-154 548.1 365 75.1
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 6.5e-154 547.7 296 85.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 6.5e-154 547.7 364 73.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 8.5e-154 547.4 364 73.1
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.1e-153 547.0 367 76.6
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.5e-153 546.6 363 74.1
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.5e-153 546.6 365 74.2
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.5e-153 545.8 371 73.6
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 4.2e-153 545.0 365 72.6
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 7.2e-153 544.3 364 73.1
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 9.4e-153 543.9 362 74.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-152 543.1 360 75.0
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.1e-152 542.7 368 74.5
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 2.7e-152 542.3 363 71.1
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.1e-152 541.2 358 74.3
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.0e-151 538.9 367 74.1
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.0e-151 538.9 363 72.7
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 3.0e-151 538.9 383 69.2
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 5.2e-151 538.1 361 74.0
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 8.8e-151 537.3 368 73.9
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.5e-150 536.6 364 74.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.0e-150 536.2 365 71.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-150 535.8 365 73.7
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 3.3e-150 535.4 362 75.1
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 4.4e-150 535.0 366 73.8
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 4.4e-150 535.0 362 71.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 4.4e-150 535.0 362 71.3
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 7.5e-150 534.3 368 73.9
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-149 532.7 366 73.2
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-149 532.7 366 73.2
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 2.8e-149 532.3 328 81.1
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 3.7e-149 531.9 362 71.3
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.3e-148 528.1 373 69.2
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.0e-147 526.2 369 69.9
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 2.2e-146 522.7 362 70.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 5.5e-145 518.1 351 71.2
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 3.0e-143 512.3 309 78.0
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 9.8e-142 507.3 322 77.0
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-141 506.9 483 57.1
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-141 506.9 384 68.5
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.8e-141 505.8 361 70.4
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.2e-139 500.4 312 75.3
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.3e-138 496.9 330 71.5
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.1e-137 493.8 387 66.9
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 9.8e-134 480.7 331 73.4
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-130 469.2 336 72.0
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 3.3e-129 465.7 325 71.4
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.2e-128 463.8 277 80.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-118 429.9 363 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 4.9e-117 425.2 284 69.4
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 8.3e-117 424.5 334 68.6
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.1e-116 424.1 280 70.4
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 9.2e-116 421.0 281 74.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.9e-113 413.3 313 65.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.1e-112 409.8 244 79.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 4.9e-109 398.7 257 77.0
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.1e-107 393.3 285 65.6
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 2.3e-106 389.8 254 76.4
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 9.9e-102 374.4 285 62.5
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 3.9e-98 362.5 292 60.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.0e-95 352.4 236 67.8
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 9.0e-95 351.3 342 59.9
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.9e-92 343.6 294 57.1
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.7e-83 313.2 288 56.2
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.5e-81 306.6 168 87.5
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.1e-75 287.0 159 83.0
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 7.1e-68 261.9 229 58.1
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 7.2e-60 235.3 127 85.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 9.3e-60 235.0 131 80.2
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.7e-59 233.4 331 45.3
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 9.4e-52 208.4 146 69.2
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-45 188.3 146 64.4
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.5e-45 185.3 100 82.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 3.6e-43 179.9 146 63.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.8e-39 167.5 124 62.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 2.2e-37 160.6 146 56.2
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.1e-35 152.5 110 64.5
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.2e-30 138.3 72 91.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.9e-20 104.4 80 61.2
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 4.2e-20 103.2 57 78.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 7.2e-20 102.4 64 78.1
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-18 96.3 67 65.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 5.2e-18 96.3 67 65.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 5.4e-15 86.3 44 84.1
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-14 85.1 44 84.1
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 2.0e-14 84.3 43 86.0
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.1e-12 78.6 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 9.5e-12 75.5 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.6e-11 73.6 40 90.0
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 1.2e-09 68.6 94 48.9
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.9e-08 63.9 58 56.9
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 3.5e-06 57.0 175 25.1


User provided reference genes

Program Settings