Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.3e-233 812.8 438 100.0
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 5.5e-216 754.2 438 92.9
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.9e-209 731.9 437 88.8
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.6e-209 730.7 437 88.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.6e-208 727.6 437 88.1
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.3e-206 722.2 438 88.1
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.2e-175 617.8 434 75.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 8.1e-175 617.5 428 76.4
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.8e-174 616.3 428 76.4
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.0e-173 612.8 433 75.5
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 3.5e-170 602.1 448 72.8
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 7.8e-170 600.9 433 73.9
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.0e-169 600.5 437 73.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 8.7e-169 597.4 437 71.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.3e-168 595.5 432 73.1
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 9.6e-168 594.0 432 72.5
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.8e-167 592.4 429 73.0
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.4e-166 590.1 435 71.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.4e-166 590.1 435 69.9
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.8e-166 589.7 428 72.9
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.8e-166 589.7 435 72.6
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.4e-166 589.3 434 71.2
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.9e-166 587.8 435 71.0
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.2e-164 582.8 438 71.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 6.4e-164 581.3 434 71.7
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.1e-163 580.5 434 70.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.2e-163 578.9 436 70.4
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 4.2e-163 578.6 433 70.2
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.1e-163 577.8 429 71.8
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 2.1e-162 576.2 435 71.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 4.6e-162 575.1 436 70.6
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 6.0e-162 574.7 432 71.5
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.3e-161 572.8 436 70.9
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.3e-161 572.8 431 71.7
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 6.7e-161 571.2 434 70.5
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.7e-161 570.9 432 71.8
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 3.3e-160 568.9 433 71.1
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 4.3e-160 568.5 436 70.0
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 2.1e-159 566.2 428 69.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 4.0e-158 562.0 434 69.6
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 4.0e-158 562.0 428 69.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.9e-158 561.2 434 68.7
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.2e-157 560.5 429 69.2
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 2.0e-157 559.7 428 70.3
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 4.5e-157 558.5 429 69.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 5.8e-157 558.1 445 67.2
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 5.8e-157 558.1 429 69.0
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 3.8e-156 555.4 437 68.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 3.8e-156 555.4 437 68.6
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.8e-156 555.4 428 70.6
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 8.4e-156 554.3 438 68.5
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.4e-155 553.5 437 68.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 1.6e-154 550.1 434 67.5
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 7.9e-154 547.7 436 67.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.0e-153 547.4 438 66.2
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.8e-153 546.6 428 68.5
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.3e-153 546.2 429 68.5
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.9e-153 545.4 436 66.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 9.6e-152 540.8 431 67.7
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.6e-151 540.0 429 69.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.6e-151 540.0 371 75.2
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.2e-151 538.1 462 65.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 8.2e-151 537.7 432 67.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 8.2e-151 537.7 435 67.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.8e-150 536.6 435 66.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.8e-150 536.6 425 66.1
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.4e-150 536.2 433 66.1
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 4.0e-150 535.4 432 66.9
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.0e-150 535.4 438 66.7
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 9.0e-150 534.3 412 67.5
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.5e-149 533.5 432 67.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.0e-149 533.1 432 66.9
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 3.4e-149 532.3 430 66.5
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 7.6e-149 531.2 439 65.8
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 4.9e-148 528.5 435 64.8
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-147 526.9 443 64.6
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.4e-147 526.9 435 65.3
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 3.2e-147 525.8 431 66.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 7.1e-147 524.6 439 64.9
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.3e-147 524.2 514 59.7
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.5e-146 522.3 443 64.1
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.3e-145 520.4 445 63.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.0e-145 519.2 431 63.8
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.0e-145 519.2 432 65.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.1e-144 517.3 416 65.6
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.5e-144 516.9 431 65.7
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.9e-144 516.5 428 63.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.7e-144 515.0 429 65.0
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.3e-143 513.8 433 64.2
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.3e-143 513.8 439 64.5
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 3.7e-143 512.3 435 63.7
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 3.1e-142 509.2 411 66.4
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 4.1e-142 508.8 420 68.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.3e-142 508.4 436 63.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.5e-141 506.9 471 60.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 5.9e-141 505.0 429 63.6
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 5.9e-141 505.0 430 64.9
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 7.7e-141 504.6 428 64.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.9e-140 502.7 428 63.1
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.9e-140 502.7 428 64.5
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.9e-139 500.0 435 63.7
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.9e-139 500.0 393 66.7
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 9.4e-139 497.7 426 65.3
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 6.1e-138 495.0 415 63.6
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 5.1e-137 491.9 433 62.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-136 490.0 445 61.8
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.5e-136 489.6 438 60.7
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.1e-134 482.3 430 62.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.5e-133 480.3 414 63.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.1e-130 469.9 422 62.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.1e-130 469.9 430 60.2
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.8e-129 466.8 429 60.6
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.0e-128 463.4 409 62.1
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.3e-127 460.7 439 58.1
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.7e-125 451.4 431 61.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 6.5e-124 448.4 432 58.3
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-123 447.6 429 59.4
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.6e-122 443.7 437 55.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 7.0e-118 428.3 443 56.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.6e-117 427.2 510 51.4
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.5e-115 419.9 313 71.2
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 6.8e-113 411.8 380 62.6
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.9e-108 396.4 344 63.7
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.6e-106 390.6 428 54.7
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.1e-106 390.2 429 55.0
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.0e-106 388.3 424 59.2
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.3e-103 380.9 299 65.2
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.2e-98 364.4 300 65.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.2e-88 331.3 433 43.4
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 5.8e-88 328.9 407 45.0
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.4e-86 322.4 250 70.4
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 7.0e-86 322.0 281 60.5
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 8.6e-76 288.5 322 54.3
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.1e-70 269.6 179 75.4
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.1e-69 267.3 201 73.1
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.1e-68 262.7 183 74.3
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-54 217.6 160 72.5
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.1e-54 215.7 195 57.9
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.2e-53 214.9 186 63.4
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.5e-53 213.4 177 62.1
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-46 191.8 147 72.1
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 6.9e-41 172.6 139 59.0
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 7.9e-37 159.1 242 45.5
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 6.7e-36 156.0 120 72.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.0e-32 144.4 119 66.4
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 3.0e-28 130.6 90 71.1
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.4e-24 117.1 80 77.5
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.2e-22 109.4 97 58.8
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-20 105.5 104 59.6
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.4e-20 105.1 219 35.2
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.5e-19 101.7 112 50.0
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.1e-09 67.4 41 82.9
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.6e-08 65.1 450 23.3
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.0e-07 62.4 196 28.1
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.0e-07 62.4 450 25.1
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.2e-07 61.2 194 25.8
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.9e-07 60.8 267 24.7
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 5.0e-07 60.1 51 62.7
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 8.5e-07 59.3 194 24.7
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.5e-06 57.8 194 28.4
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-06 57.8 201 25.9
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.5e-06 57.8 194 26.3
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.2e-06 57.4 146 27.4
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.2e-06 57.4 146 27.4
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 5.5e-06 56.6 201 25.9
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 7.2e-06 56.2 201 25.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 9.4e-06 55.8 194 26.8
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 9.4e-06 55.8 197 25.9


User provided reference genes

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