Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 9.6e-206 719.9 362 100.0
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 7.6e-187 657.1 363 90.9
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-177 626.7 363 85.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-177 626.3 363 85.7
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.9e-175 618.2 363 84.6
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 6.3e-173 610.9 361 82.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.3e-170 603.2 361 81.4
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 3.6e-168 595.1 357 81.2
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.4e-167 593.2 361 78.9
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.3e-166 588.6 361 80.1
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.0e-163 579.3 411 72.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 5.9e-163 577.8 362 77.3
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.9e-163 577.8 355 79.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.2e-161 571.6 364 76.9
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 3.6e-160 568.5 361 76.2
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 6.1e-160 567.8 365 77.5
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.8e-159 566.2 361 75.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.2e-157 559.3 363 74.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.2e-157 559.3 365 74.8
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 8.2e-157 557.4 361 74.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 8.2e-157 557.4 373 72.7
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.4e-156 555.8 365 75.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 4.1e-156 555.1 361 74.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 4.5e-155 551.6 361 74.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 5.9e-155 551.2 363 73.8
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 7.7e-155 550.8 362 76.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 7.7e-155 550.8 363 73.6
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 7.7e-155 550.8 365 75.3
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 3.8e-154 548.5 364 73.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.8e-154 548.5 358 73.7
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 8.5e-154 547.4 361 73.4
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.9e-153 546.2 361 72.9
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.2e-153 545.4 361 72.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 3.2e-153 545.4 363 74.4
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.2e-153 544.3 361 71.7
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.2e-152 543.5 361 71.7
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.1e-152 542.7 361 72.6
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.6e-152 542.0 362 74.0
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.4e-151 540.0 369 71.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.4e-151 540.0 362 72.4
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.8e-151 539.7 364 74.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.8e-151 539.7 361 73.1
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.8e-151 539.7 362 72.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.0e-151 538.9 373 70.5
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 4.0e-151 538.5 362 71.8
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 5.2e-151 538.1 361 72.3
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.2e-150 537.0 395 68.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.0e-150 536.2 358 74.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.6e-150 535.8 369 71.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.6e-150 535.8 357 75.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.3e-149 533.5 360 72.2
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.3e-149 533.5 360 71.9
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.3e-149 533.5 363 72.7
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.2e-149 532.7 369 71.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.2e-149 532.7 359 72.1
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 2.8e-149 532.3 360 71.7
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.8e-149 531.6 360 72.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 6.3e-149 531.2 360 71.4
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.8e-148 529.6 358 72.3
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 3.1e-148 528.9 360 71.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-148 528.9 395 65.8
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 3.1e-148 528.9 360 71.9
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.6e-147 526.6 362 70.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 4.5e-147 525.0 360 71.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 5.9e-147 524.6 362 69.9
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.9e-146 522.3 361 70.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.8e-146 521.9 354 73.2
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.8e-146 521.9 354 73.2
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 5.0e-146 521.5 360 72.2
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 6.5e-146 521.2 361 70.1
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.1e-145 520.4 319 77.7
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.9e-145 519.6 360 69.4
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.2e-145 518.8 360 70.3
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 4.2e-145 518.5 351 72.4
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.1e-144 516.2 362 69.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.7e-144 515.8 360 70.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.7e-144 515.0 380 67.1
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-143 512.7 386 66.1
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 6.8e-143 511.1 362 67.1
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 6.8e-143 511.1 351 71.5
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-142 510.4 386 65.8
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.5e-142 510.0 386 65.8
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 8.3e-141 504.2 363 67.2
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 7.0e-140 501.1 351 71.2
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.2e-139 500.4 361 68.4
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.7e-138 496.5 360 67.5
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.7e-138 496.5 313 78.0
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.2e-138 496.1 397 64.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.2e-138 496.1 361 69.3
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 6.5e-138 494.6 318 75.2
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 8.5e-138 494.2 355 67.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.2e-134 483.8 367 67.3
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.2e-134 483.8 367 67.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-133 480.3 360 65.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 4.9e-133 478.4 362 66.3
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-131 473.0 361 65.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.7e-130 469.9 354 65.0
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 5.6e-129 464.9 326 69.9
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 7.3e-129 464.5 378 63.8
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.1e-128 463.0 359 63.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.6e-128 462.2 363 64.5
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 3.6e-128 462.2 298 75.2
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 9.8e-126 454.1 301 75.1
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-124 450.3 353 63.5
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.3e-122 443.7 292 74.0
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.7e-122 443.4 298 70.5
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 2.5e-121 439.5 297 73.1
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-117 427.2 331 65.6
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-116 423.7 386 58.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 9.2e-116 421.0 362 63.3
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-110 403.3 287 69.3
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 5.8e-110 401.7 361 59.6
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.3e-105 385.6 361 57.9
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 6.2e-104 381.7 364 56.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 8.9e-103 377.9 360 53.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.2e-102 377.5 286 62.6
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.0e-102 376.7 346 54.6
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.9e-101 372.9 361 55.4
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.8e-96 356.3 341 51.9
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 6.2e-96 355.1 354 55.9
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 9.0e-95 351.3 268 65.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 5.8e-94 348.6 311 54.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 6.4e-93 345.1 335 49.9
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.2e-60 236.1 154 71.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.9e-57 227.3 327 37.9
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.6e-51 207.6 137 70.1
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 5.9e-46 189.1 375 33.6
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-44 184.1 140 67.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.3e-42 177.2 126 70.6
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 8.5e-37 158.7 342 33.9
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-34 151.4 87 83.9
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 8.8e-34 148.7 103 68.9
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-33 148.3 116 66.4
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-32 144.4 83 84.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.8e-32 143.7 198 41.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 6.3e-32 142.5 135 54.8
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-31 140.6 87 75.9
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-31 140.2 87 75.9
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-29 134.0 79 82.3
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-28 131.7 78 82.1
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-28 131.3 79 81.0
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 78 80.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-28 129.8 78 80.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.5e-28 129.4 78 79.5
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.4e-28 128.6 79 78.5
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-27 128.3 78 80.8
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-26 124.0 79 75.9
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.4e-25 119.8 89 69.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.5e-25 119.0 70 80.0
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 9.8e-25 118.6 106 61.3
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-24 118.2 101 62.4
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 2.8e-24 117.1 106 61.3
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.8e-23 114.4 107 63.6
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 78 66.7
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.6e-22 111.3 352 25.3
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-18 96.7 56 83.9
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.3e-16 91.7 73 60.3
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 4.9e-16 89.7 60 70.0
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-15 87.8 89 55.1
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 4.1e-15 86.7 45 91.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 9.2e-15 85.5 67 67.2
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.5e-12 77.4 92 48.9
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-10 70.9 52 63.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-09 68.6 43 74.4
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-08 64.7 42 69.0
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.9e-08 63.2 48 64.6
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.9e-08 63.2 93 41.9
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.1e-07 62.0 79 45.6
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.1e-07 62.0 93 41.9
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.1e-07 62.0 93 41.9
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 1.9e-07 61.2 43 65.1
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.9e-07 61.2 93 41.9
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.4e-07 60.8 100 36.0
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.2e-07 60.5 81 45.7
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.4e-07 59.7 37 70.3
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.4e-07 59.7 81 43.2
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 7.0e-07 59.3 79 45.6
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-06 58.2 42 59.5
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 7.8e-06 55.8 60 51.7
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 7.8e-06 55.8 60 51.7


User provided reference genes

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