Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 5.3e-170 600.9 297 100.0
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 7.0e-146 520.8 301 85.7
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 1.9e-143 512.7 304 86.2
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.4e-138 496.5 302 83.4
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 7.0e-138 494.2 302 83.1
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 1.0e-136 490.3 302 82.8
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 1.4e-106 390.2 297 70.0
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 7.3e-103 377.9 302 67.9
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 6.2e-102 374.8 302 68.2
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 8.4e-99 364.4 309 68.3
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 8.4e-99 364.4 304 67.1
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 1.2e-97 360.5 302 67.2
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 6.0e-97 358.2 297 68.7
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 1.3e-96 357.1 298 66.8
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 7.3e-95 351.3 307 64.8
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 9.6e-95 350.9 300 67.0
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 2.8e-94 349.4 304 64.5
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 4.8e-94 348.6 301 64.8
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 6.2e-94 348.2 297 66.7
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 8.1e-94 347.8 310 64.8
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 2.0e-92 343.2 310 64.2
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 2.0e-92 343.2 295 67.1
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 9.9e-92 340.9 308 63.3
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 1.3e-91 340.5 311 61.1
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 2.2e-91 339.7 301 64.5
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.1e-89 333.2 287 64.8
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 2.3e-88 329.7 304 63.8
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 3.0e-88 329.3 296 61.8
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 2.5e-87 326.2 291 62.9
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 1.6e-86 323.6 300 63.0
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 1.6e-86 323.6 298 61.4
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 2.8e-86 322.8 306 59.5
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 2.8e-86 322.8 303 61.7
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.7e-86 322.4 304 60.5
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 3.7e-86 322.4 302 58.9
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 4.8e-86 322.0 292 63.4
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 6.2e-86 321.6 314 60.2
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 1.1e-85 320.9 304 60.2
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 2.4e-85 319.7 315 60.0
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 2.4e-85 319.7 315 60.0
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 4.0e-85 318.9 303 58.7
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 6.9e-85 318.2 308 61.7
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 3.4e-84 315.8 310 59.7
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 3.4e-84 315.8 284 63.4
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 4.5e-84 315.5 296 62.8
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 9.9e-84 314.3 314 58.9
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 1.7e-83 313.5 317 59.0
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 1.7e-83 313.5 297 65.3
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 3.8e-83 312.4 313 58.8
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 1.1e-82 310.8 279 65.2
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 1.9e-82 310.1 288 61.1
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 4.2e-82 308.9 302 61.3
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 5.5e-82 308.5 299 60.9
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 1.2e-81 307.4 296 60.1
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 1.6e-81 307.0 289 59.5
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 3.5e-81 305.8 346 54.6
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 3.5e-81 305.8 288 60.1
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.0e-80 304.3 288 59.7
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 3.9e-80 302.4 304 58.2
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 6.7e-80 301.6 340 55.6
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.9e-79 300.1 297 60.3
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 4.3e-79 298.9 304 57.2
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 7.4e-79 298.1 304 57.6
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 9.6e-79 297.7 355 51.5
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 1.6e-78 297.0 354 52.0
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.1e-78 296.6 289 58.1
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.1e-78 296.6 289 58.1
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 3.7e-78 295.8 285 60.4
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 6.2e-78 295.0 337 55.5
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.2e-76 290.8 295 59.0
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 1.5e-76 290.4 291 59.5
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 3.4e-76 289.3 321 56.7
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 3.8e-75 285.8 396 47.0
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 1.1e-74 284.3 299 53.5
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 1.4e-74 283.9 299 56.5
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.2e-74 282.7 321 56.7
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 7.1e-74 281.6 306 58.8
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 9.3e-74 281.2 289 57.8
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 1.2e-73 280.8 288 58.7
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-73 280.0 270 58.9
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 3.5e-73 279.3 265 59.6
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 7.9e-73 278.1 302 56.3
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 3.9e-72 275.8 300 54.0
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 1.6e-70 270.4 291 56.7
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 1.5e-63 247.3 282 50.0
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 2.8e-62 243.0 137 86.1
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 7.7e-60 235.0 300 50.3
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 5.5e-58 228.8 327 47.4
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 7.2e-58 228.4 247 56.7
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.2e-54 216.9 109 89.9
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 6.3e-54 215.3 283 49.1
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 1.3e-51 207.6 109 89.0
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 5.5e-50 202.2 111 84.7
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 2.7e-49 199.9 271 45.0
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.0e-48 198.0 290 44.8
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 7.4e-47 191.8 98 89.8
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 9.1e-45 184.9 208 59.1
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 1.2e-44 184.5 98 88.8
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.6e-44 184.1 98 89.8
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 2.0e-44 183.7 214 48.1
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 5.5e-42 175.6 207 56.0
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 8.0e-41 171.8 92 85.9
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 3.0e-40 169.9 127 74.0
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 3.7e-38 162.9 124 61.3
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 2.0e-36 157.1 98 78.6
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 4.5e-36 156.0 203 51.2
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 2.9e-35 153.3 190 56.3
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 5.0e-35 152.5 98 72.4
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 8.0e-33 145.2 208 50.0
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 5.2e-24 115.9 192 42.7
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.4e-21 107.8 198 45.5
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 5.0e-19 99.4 100 54.0
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 6.6e-19 99.0 100 54.0
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 6.6e-19 99.0 100 54.0
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 6.6e-19 99.0 100 54.0
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 5.8e-15 85.9 191 37.2
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 1.1e-13 81.6 82 54.9
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 3.2e-13 80.1 41 90.2
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.7e-11 74.3 191 34.6
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 2.5e-10 70.5 131 48.1
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 1.2e-09 68.2 44 70.5
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 4.7e-09 66.2 116 48.3
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 9.8e-07 58.5 99 41.4


User provided reference genes

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