Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 7.7e-84 313.9 175 100.0
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 1.0e-48 197.2 181 64.6
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 3.3e-34 149.1 173 48.6
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 1.6e-33 146.7 181 58.0
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 6.8e-32 141.4 178 48.3
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 4.4e-31 138.7 177 49.2
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.7e-27 126.7 184 47.3
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.7e-27 126.7 184 47.3
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 1.7e-27 126.7 174 46.0
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 1.6e-25 120.2 180 41.1
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 2.1e-25 119.8 173 43.9
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 8.1e-25 117.9 191 41.9
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.4e-24 117.1 192 42.7
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 4.4e-23 112.1 186 41.4
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.4e-23 112.1 187 43.3
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 9.8e-23 110.9 181 40.3
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 1.3e-22 110.5 175 44.0
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.1e-21 107.5 173 43.4
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.9e-21 106.7 174 40.8
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.2e-21 105.9 176 38.6
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 1.2e-20 104.0 169 40.2
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 1.6e-20 103.6 166 41.0
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.7e-20 102.8 104 57.7
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 7.8e-20 101.3 173 40.5
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-19 100.9 104 56.7
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 1.3e-19 100.5 181 39.8
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 2.3e-19 99.8 179 37.4
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 2.3e-19 99.8 169 45.0
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 3.9e-19 99.0 179 39.1
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 8.6e-19 97.8 162 38.3
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 5.6e-18 95.1 170 36.5
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 9.5e-18 94.4 175 41.7
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.2e-17 94.0 171 39.2
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.1e-17 93.2 79 60.8
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 3.6e-17 92.4 144 38.9
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 3.6e-17 92.4 190 36.3
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.7e-17 92.0 181 38.7
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 1.4e-16 90.5 177 41.8
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.8e-16 90.1 199 34.2
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 1.8e-16 90.1 184 38.0
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 4.0e-16 89.0 159 37.1
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 6.8e-16 88.2 163 37.4
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.2e-15 87.4 151 37.7
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 1.5e-15 87.0 161 39.8
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.0e-15 86.7 180 40.0
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 4.4e-15 85.5 180 36.1
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.4e-15 85.5 91 52.7
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.2e-14 83.2 161 37.3
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 2.9e-14 82.8 187 43.3
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 2.9e-14 82.8 174 36.8
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.1e-13 80.9 175 36.0
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.1e-13 80.9 175 36.6
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 1.4e-13 80.5 160 39.4
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 1.4e-13 80.5 160 39.4
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 1.4e-13 80.5 160 39.4
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 3.2e-13 79.3 180 36.1
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 4.1e-13 79.0 150 41.3
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 9.2e-13 77.8 120 40.8
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.2e-12 77.4 171 37.4
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 1.6e-12 77.0 110 43.6
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.6e-12 77.0 120 40.0
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.6e-12 77.0 178 37.1
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 2.1e-12 76.6 171 36.3
Gohir.A09G156500 Gossypium hirsutum HOM05D036294 ORTHO05D036268 4.6e-12 75.5 170 37.6
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 7.8e-12 74.7 188 36.2
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 2.3e-11 73.2 101 43.6
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 2.3e-11 73.2 96 44.8
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 2.3e-11 73.2 169 37.9
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 2.3e-11 73.2 162 34.6
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.3e-11 73.2 87 51.7
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 8.6e-11 71.2 159 34.0
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 1.9e-10 70.1 141 36.2
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 1.9e-10 70.1 101 42.6
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 1.9e-10 70.1 80 43.8
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 3.3e-10 69.3 165 32.7
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 4.3e-10 68.9 162 38.3
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 5.6e-10 68.6 141 36.2
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 7.3e-10 68.2 174 35.1
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 1.6e-09 67.0 172 34.3
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 2.1e-09 66.6 91 42.9
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 3.6e-09 65.9 166 37.3
ClCG04G008210 Citrullus lanatus HOM05D023073 ORTHO05D005174 6.2e-09 65.1 84 45.2
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 1.4e-08 63.9 76 47.4
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 1.4e-08 63.9 182 34.6
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 1.8e-08 63.5 153 33.3
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.8e-08 63.5 117 41.0
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 3.1e-08 62.8 170 31.2
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 3.1e-08 62.8 76 47.4
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 5.2e-08 62.0 130 33.8
Nitab4.5_0000349g0170 Nicotiana tabacum HOM05D016316 ORTHO05D018871 5.2e-08 62.0 164 32.3
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 5.2e-08 62.0 152 32.9
MELO3C003127.2 Cucumis melo HOM05D023073 ORTHO05D005174 8.9e-08 61.2 110 40.0
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 8.9e-08 61.2 165 36.4
Sed0016652 Sechium edule HOM05D023073 ORTHO05D005174 1.2e-07 60.8 85 45.9
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 1.5e-07 60.5 88 40.9
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 2.0e-07 60.1 87 42.5
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 2.0e-07 60.1 88 42.0
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 2.6e-07 59.7 173 34.1
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 3.4e-07 59.3 88 40.9
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 3.4e-07 59.3 96 44.8
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 4.4e-07 58.9 88 39.8
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 4.4e-07 58.9 71 45.1
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 5.8e-07 58.5 81 46.9
A10p33240 Brassica napus HOM05D010528 ORTHO05D005174 5.8e-07 58.5 88 43.2
BraA10t45352Z Brassica rapa HOM05D010528 ORTHO05D005174 5.8e-07 58.5 88 43.2
SalBow3G2287 Salvia bowleyana HOM05D005967 ORTHO05D005174 5.8e-07 58.5 84 53.6
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 9.9e-07 57.8 92 44.6
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 9.9e-07 57.8 79 44.3
Sp7g08770 Schrenkiella parvula HOM05D010528 ORTHO05D005174 9.9e-07 57.8 88 40.9
SGA_v2.0_scaffold126G33790 Striga asiatica HOM05D005967 ORTHO05D005174 9.9e-07 57.8 88 37.5
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 9.9e-07 57.8 168 31.0
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 1.3e-06 57.4 88 39.8
MD12G1140600 Malus domestica HOM05D005967 ORTHO05D005174 1.3e-06 57.4 182 31.9
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 1.7e-06 57.0 85 44.7
Gohir.D09G151850 Gossypium hirsutum HOM05D036294 ORTHO05D036268 1.7e-06 57.0 170 32.4
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 2.2e-06 56.6 149 30.9
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 2.2e-06 56.6 181 29.3
Sed0010435 Sechium edule HOM05D023073 ORTHO05D005174 2.2e-06 56.6 86 41.9
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 3.8e-06 55.8 81 43.2
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 6.4e-06 55.1 130 35.4
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 6.4e-06 55.1 163 33.1
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 8.4e-06 54.7 88 40.9
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 8.4e-06 54.7 88 40.9
Gorai.006G173200 Gossypium raimondii HOM05D036294 ORTHO05D036268 8.4e-06 54.7 170 31.8
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 8.4e-06 54.7 101 35.6


User provided reference genes

Program Settings