Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 4.8e-55 217.6 112 100.0
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.4e-45 184.9 112 85.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.2e-43 178.3 112 82.1
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 9.3e-43 176.8 113 83.2
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.2e-42 176.4 112 81.2
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.1e-42 175.6 112 81.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.1e-42 175.6 112 81.2
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 7.9e-42 173.7 112 80.4
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.0e-41 173.3 115 80.9
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 3.9e-33 144.8 112 70.5
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 3.9e-33 144.8 120 67.5
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.1e-32 143.3 120 65.0
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 5.7e-32 141.0 124 62.9
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.3e-31 139.8 122 68.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.3e-31 137.5 116 68.1
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 6.3e-31 137.5 121 65.3
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 6.3e-31 137.5 112 67.0
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.4e-30 136.3 119 63.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.4e-30 136.3 116 66.4
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.4e-30 136.3 111 64.9
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.8e-30 136.0 115 61.7
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.8e-30 136.0 115 61.7
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 2.4e-30 135.6 115 63.5
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.4e-30 135.6 120 64.2
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 4.1e-30 134.8 124 63.7
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 5.3e-30 134.4 118 61.9
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 6.9e-30 134.0 119 60.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 9.1e-30 133.7 115 65.2
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.2e-29 133.3 116 62.1
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.5e-29 132.9 120 63.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.6e-29 132.1 120 60.0
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 3.4e-29 131.7 123 64.2
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.4e-29 131.7 121 64.5
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 4.5e-29 131.3 118 64.4
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 4.5e-29 131.3 121 64.5
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.5e-29 131.3 121 64.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.5e-29 131.3 120 63.3
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 4.5e-29 131.3 119 63.0
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 5.9e-29 131.0 74 83.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 5.9e-29 131.0 116 64.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 5.9e-29 131.0 120 64.2
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.2e-28 129.0 114 63.2
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.2e-28 129.0 112 61.6
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 3.8e-28 128.3 122 61.5
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.8e-28 128.3 74 83.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 5.0e-28 127.9 120 59.2
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 6.5e-28 127.5 109 66.1
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 6.5e-28 127.5 118 60.2
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-27 126.7 114 63.2
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.1e-27 126.7 109 66.1
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.1e-27 126.7 117 62.4
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.4e-27 126.3 121 57.9
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.9e-27 125.9 114 63.2
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.9e-27 125.9 111 60.4
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 2.5e-27 125.6 77 76.6
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 3.2e-27 125.2 121 61.2
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 3.2e-27 125.2 74 81.1
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 3.2e-27 125.2 106 61.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 3.2e-27 125.2 80 76.2
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 4.2e-27 124.8 117 58.1
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 5.5e-27 124.4 114 61.4
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 5.5e-27 124.4 113 61.9
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 5.5e-27 124.4 113 61.9
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 5.5e-27 124.4 113 61.9
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 5.5e-27 124.4 114 62.3
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 5.5e-27 124.4 122 58.2
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 7.2e-27 124.0 117 56.4
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 7.2e-27 124.0 122 59.8
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.2e-27 124.0 122 61.5
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 7.2e-27 124.0 122 59.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 9.4e-27 123.6 108 59.3
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.6e-26 122.9 114 61.4
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.6e-26 122.9 74 77.0
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.6e-26 122.9 106 60.4
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.1e-26 122.5 78 74.4
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.7e-26 122.1 110 57.3
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.7e-26 122.1 110 57.3
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.7e-26 122.1 113 57.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.6e-26 121.7 79 73.4
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 3.6e-26 121.7 80 73.8
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 3.6e-26 121.7 118 55.9
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.7e-26 121.3 113 60.2
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 4.7e-26 121.3 110 59.1
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 4.7e-26 121.3 113 58.4
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.7e-26 121.3 113 59.3
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 6.1e-26 120.9 119 56.3
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 6.1e-26 120.9 112 57.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 6.1e-26 120.9 112 57.1
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 6.1e-26 120.9 112 57.1
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 6.1e-26 120.9 110 58.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.0e-25 120.2 110 60.9
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.4e-25 119.8 110 58.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 1.4e-25 119.8 121 57.0
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.4e-25 119.8 120 55.8
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.4e-25 119.8 117 61.5
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.8e-25 119.4 73 79.5
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.8e-25 119.4 110 58.2
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.8e-25 119.4 78 74.4
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.8e-25 119.4 78 74.4
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.0e-25 118.6 110 57.3
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.9e-25 118.2 110 58.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 5.2e-25 117.9 116 57.8
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.7e-25 117.5 91 67.0
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 8.8e-25 117.1 110 56.4
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.5e-24 116.3 117 58.1
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.5e-24 116.3 117 56.4
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.0e-24 115.9 73 75.3
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.0e-24 115.9 97 59.8
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 4.4e-24 114.8 114 56.1
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 4.4e-24 114.8 117 53.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 7.4e-24 114.0 114 56.1
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.7e-24 113.6 64 84.4
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.8e-23 112.1 73 71.2
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.4e-22 109.8 64 79.7
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 5.3e-22 107.8 153 48.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.0e-21 105.9 73 69.9
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.5e-21 105.1 102 56.9
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 4.5e-21 104.8 112 53.6
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.9e-21 104.4 64 79.7
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 1.3e-20 103.2 98 64.3
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.8e-20 101.7 72 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.1e-19 100.1 73 65.8
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.6e-18 96.3 71 66.2
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 8.0e-18 94.0 59 72.9
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 2.3e-17 92.4 98 57.1
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.3e-17 92.4 97 58.8
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 3.0e-17 92.0 71 64.8
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.6e-16 89.0 65 67.7
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 3.7e-15 85.1 77 58.4
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.8e-14 82.8 93 52.7
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 7.0e-14 80.9 78 52.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-13 79.7 88 52.3
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.5e-13 78.2 44 75.0
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 6.5e-12 74.3 102 47.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.5e-11 72.4 47 72.3
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.8e-09 64.3 140 40.7
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 1.4e-06 56.6 96 36.5
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 1.8e-06 56.2 73 42.5


User provided reference genes

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