Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 4.1e-53 211.1 102 100.0
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 3.3e-47 191.4 102 91.2
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 8.8e-40 166.8 102 79.4
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 2.6e-39 165.2 102 81.4
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 4.4e-39 164.5 102 78.4
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 9.7e-39 163.3 102 79.4
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 4.8e-38 161.0 102 76.5
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.1e-37 159.8 103 78.6
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 1.1e-34 149.8 95 78.9
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 6.1e-25 117.5 102 62.7
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 5.2e-24 114.4 102 61.8
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 1.5e-23 112.8 101 60.4
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 2.8e-22 108.6 85 62.4
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 8.3e-22 107.1 101 55.4
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 4.1e-21 104.8 100 58.0
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.6e-20 102.8 100 54.0
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 4.5e-20 101.3 105 57.1
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.5e-20 101.3 100 55.0
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.5e-20 101.3 100 55.0
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 1.3e-19 99.8 100 52.0
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 2.3e-19 99.0 108 50.9
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 1.1e-18 96.7 102 54.9
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 1.5e-18 96.3 98 54.1
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.5e-18 96.3 100 53.0
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.5e-18 96.3 71 66.2
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 5.6e-18 94.4 100 53.0
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 5.6e-18 94.4 83 57.8
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 9.5e-18 93.6 98 51.0
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.2e-17 93.2 101 55.4
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 1.2e-17 93.2 101 55.4
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 8.9e-16 87.0 83 54.2
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 1.2e-15 86.7 64 67.2
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 2.0e-15 85.9 83 50.6
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 2.0e-15 85.9 100 48.0
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.6e-15 85.5 70 61.4
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 2.6e-15 85.5 100 48.0
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 3.4e-15 85.1 104 44.2
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.4e-15 84.7 72 55.6
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 4.4e-15 84.7 64 60.9
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 9.8e-15 83.6 74 52.7
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 1.3e-14 83.2 102 46.1
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 1.3e-14 83.2 102 44.1
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 1.3e-14 83.2 74 54.1
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 1.3e-14 83.2 65 56.9
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 3.7e-14 81.6 92 46.7
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 4.9e-14 81.3 101 47.5
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 4.9e-14 81.3 105 47.6
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.9e-14 81.3 70 54.3
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 8.3e-14 80.5 64 57.8
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 1.8e-13 79.3 105 44.8
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 1.8e-13 79.3 102 42.2
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 2.4e-13 79.0 67 56.7
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 5.4e-13 77.8 62 58.1
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 1.2e-12 76.6 70 54.3
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 1.6e-12 76.3 64 56.2
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 2.0e-12 75.9 61 57.4
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 4.6e-12 74.7 101 44.6
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 4.6e-12 74.7 90 46.7
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 6.0e-12 74.3 64 57.8
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 7.8e-12 73.9 79 51.9
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 1.3e-11 73.2 61 52.5
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.7e-11 72.8 64 56.2
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 2.3e-11 72.4 102 42.2
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.5e-10 69.7 64 53.1
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.9e-10 69.3 61 54.1
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 2.5e-10 68.9 64 50.0
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 2.1e-09 65.9 96 38.5
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 2.8e-09 65.5 70 44.3
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 1.4e-08 63.2 61 45.9
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 8.9e-08 60.5 69 43.5
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.9e-08 60.5 69 43.5
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 1.2e-07 60.1 93 40.9
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.5e-07 59.7 65 46.2
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 2.0e-07 59.3 64 46.9
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.0e-07 59.3 66 43.9
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.0e-07 59.3 66 43.9
Manes.01G200000 Manihot esculenta HOM05D000077 ORTHO05D000552 2.0e-07 59.3 66 40.9
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.6e-07 58.9 71 42.3
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.6e-07 58.9 79 43.0
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 46.9
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.4e-07 58.5 71 40.8
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 46.9
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 45.3
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 3.4e-07 58.5 64 43.8
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 4.4e-07 58.2 70 42.9
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 4.4e-07 58.2 64 45.3
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 5.8e-07 57.8 64 45.3
RhsimUnG0178600 Rhododendron simsii HOM05D007791 ORTHO05D000653 5.8e-07 57.8 57 50.9
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 5.8e-07 57.8 67 41.8
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 5.8e-07 57.8 69 43.5
DCAR_011993 Daucus carota HOM05D001004 ORTHO05D000653 7.5e-07 57.4 64 48.4
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 7.5e-07 57.4 64 40.6
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 9.8e-07 57.0 70 42.9
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 9.8e-07 57.0 64 43.8
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 9.8e-07 57.0 64 45.3
Ciclev10006680m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.3e-06 56.6 71 42.3
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 1.3e-06 56.6 66 39.4
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 1.3e-06 56.6 64 45.3
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 1.3e-06 56.6 64 45.3
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.3e-06 56.6 84 38.1
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 1.3e-06 56.6 64 42.2
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 1.7e-06 56.2 65 44.6
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 45.3
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 42.2
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.7e-06 56.2 64 48.4
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 1.7e-06 56.2 64 40.6
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 1.7e-06 56.2 65 43.1
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 1.7e-06 56.2 64 43.8
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.2e-06 55.8 66 45.5
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.2e-06 55.8 71 40.8
MELO3C029118.2 Cucumis melo HOM05D001004 ORTHO05D000653 2.2e-06 55.8 63 41.3
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.2e-06 55.8 64 43.8
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.2e-06 55.8 64 43.8
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 45.3
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 45.3
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 2.2e-06 55.8 64 46.9
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.9e-06 55.5 69 44.9
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.9e-06 55.5 69 44.9
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 2.9e-06 55.5 64 42.2
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 2.9e-06 55.5 69 40.6
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.7e-06 55.1 64 40.6
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 3.7e-06 55.1 69 40.6
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 3.7e-06 55.1 64 45.3
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 3.7e-06 55.1 64 42.2
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 4.9e-06 54.7 66 43.9
CsaV3_7G026940 Cucumis sativus L. HOM05D001004 ORTHO05D000653 4.9e-06 54.7 64 40.6
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 4.9e-06 54.7 66 43.9
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 4.9e-06 54.7 64 45.3
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.4e-06 54.3 66 43.9
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.4e-06 54.3 66 43.9
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 6.4e-06 54.3 64 43.8
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 6.4e-06 54.3 64 43.8
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 6.4e-06 54.3 62 40.3
EL10Ac5g10437 Beta vulgaris HOM05D001004 ORTHO05D000653 8.3e-06 53.9 66 42.4
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 8.3e-06 53.9 64 39.1
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 8.3e-06 53.9 64 46.9


User provided reference genes

Program Settings