Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 7.1e-47 190.3 98 100.0
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 6.1e-38 160.6 98 85.7
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.7e-32 142.5 91 84.6
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.6e-30 134.8 104 74.0
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 6.7e-29 130.6 99 69.7
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 6.7e-29 130.6 99 69.7
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.8e-29 130.2 106 70.8
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.0e-28 129.0 104 72.1
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 5.7e-28 127.5 97 72.2
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.3e-27 126.3 103 66.0
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.8e-26 122.5 98 65.3
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.4e-26 122.1 99 71.7
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.5e-25 119.4 97 67.0
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 5.9e-25 117.5 103 65.0
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.9e-25 117.5 103 65.0
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 5.9e-25 117.5 101 68.3
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.3e-24 116.3 99 61.6
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.7e-24 115.9 98 66.3
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 6.5e-24 114.0 99 64.6
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 8.5e-24 113.6 89 66.3
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.5e-23 112.1 95 64.2
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 4.2e-23 111.3 96 65.6
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 7.2e-23 110.5 95 63.2
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 4.7e-22 107.8 103 63.1
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.4e-21 106.3 95 58.9
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.3e-21 105.5 97 59.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.0e-21 105.1 96 60.4
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 3.0e-21 105.1 98 61.2
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 4.0e-21 104.8 104 59.6
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.2e-21 104.4 100 58.0
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 5.2e-21 104.4 100 61.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.1e-20 103.2 105 59.0
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 2.0e-20 102.4 99 63.6
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 2.6e-20 102.1 96 59.4
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.6e-20 102.1 98 57.1
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 3.3e-20 101.7 90 66.7
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.3e-19 99.8 101 59.4
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.3e-19 99.8 100 60.0
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 3.7e-19 98.2 101 57.4
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 6.3e-19 97.4 91 61.5
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 8.2e-19 97.1 99 57.6
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.1e-18 96.7 99 54.5
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.1e-18 96.7 99 56.6
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.4e-18 96.3 94 61.7
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 4.1e-18 94.7 99 57.6
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 9.1e-18 93.6 97 55.7
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 9.1e-18 93.6 71 71.8
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 9.1e-18 93.6 89 59.6
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.6e-17 92.8 98 54.1
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 2.0e-17 92.4 98 57.1
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 2.0e-17 92.4 98 51.0
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.6e-17 92.0 92 60.9
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 7.7e-17 90.5 94 56.4
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.0e-16 90.1 93 52.7
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.7e-16 89.4 100 55.0
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 2.2e-16 89.0 98 54.1
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 3.8e-16 88.2 99 54.5
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 1.1e-15 86.7 90 54.4
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 1.9e-15 85.9 98 52.0
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 3.2e-15 85.1 86 53.5
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 3.2e-15 85.1 102 52.9
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 7.2e-15 84.0 101 53.5
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 9.4e-15 83.6 96 52.1
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 3.6e-14 81.6 100 50.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 8.0e-14 80.5 101 54.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 1.0e-13 80.1 96 50.0
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 5.2e-13 77.8 101 50.5
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 8.8e-13 77.0 80 55.0
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 8.8e-13 77.0 86 57.0
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.0e-12 75.9 100 50.0
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.6e-12 75.5 95 48.4
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.4e-12 75.1 78 52.6
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 4.4e-12 74.7 99 47.5
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.2e-11 72.4 87 47.1
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 6.3e-11 70.9 87 50.6
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 9.1e-10 67.0 89 46.1
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 1.6e-09 66.2 107 43.0
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 2.0e-09 65.9 69 60.9
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 2.0e-09 65.9 95 43.2
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 7.7e-09 63.9 87 47.1
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.3e-08 63.2 104 46.2
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.7e-08 62.8 104 46.2
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 2.2e-08 62.4 104 46.2
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 5.0e-08 61.2 94 42.6
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 5.0e-08 61.2 104 44.2
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 1.1e-07 60.1 89 40.4
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.5e-07 59.7 101 40.6
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 1.9e-07 59.3 64 51.6
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 1.9e-07 59.3 54 51.9
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 3.2e-07 58.5 98 48.0
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 4.2e-07 58.2 98 44.9
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 5.5e-07 57.8 79 48.1
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 5.5e-07 57.8 86 44.2
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 5.5e-07 57.8 89 44.9
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 5.5e-07 57.8 74 52.7
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 7.2e-07 57.4 98 46.9
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 7.2e-07 57.4 89 47.2
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 7.2e-07 57.4 98 46.9
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 9.4e-07 57.0 89 44.9
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 9.4e-07 57.0 89 46.1
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 1.2e-06 56.6 89 46.1
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.2e-06 56.6 70 54.3
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 1.6e-06 56.2 47 61.7
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 2.7e-06 55.5 85 41.2
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 3.6e-06 55.1 89 47.2
BraA10t45380Z Brassica rapa HOM05D009057 ORTHO05D011698 4.7e-06 54.7 86 43.0
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 4.7e-06 54.7 102 37.3
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 6.1e-06 54.3 62 50.0
CARHR211270 Cardamine hirsuta HOM05D009057 ORTHO05D011698 6.1e-06 54.3 84 41.7


User provided reference genes

Program Settings