Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 0.0e+00 1099.3 532 100.0
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 5.0e-227 791.2 650 63.7
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.2e-226 788.5 651 63.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.2e-167 594.0 334 82.9
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 2.4e-165 586.3 658 50.9
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.6e-161 573.5 661 48.3
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.0e-147 527.7 660 44.2
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.7e-147 526.9 661 44.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.3e-146 522.7 663 47.2
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 2.1e-145 520.0 664 46.5
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 9.0e-144 514.6 669 44.7
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 3.4e-143 512.7 675 44.4
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 4.2e-141 505.8 670 44.6
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 5.1e-139 498.8 657 45.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 5.6e-138 495.4 623 46.4
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.6e-137 493.8 673 44.3
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.1e-137 493.4 670 43.6
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 6.2e-137 491.9 519 53.0
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 7.1e-133 478.4 664 43.2
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 7.1e-133 478.4 655 43.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.6e-132 477.2 668 43.0
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-132 476.5 668 42.8
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.3e-131 473.4 654 40.7
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 8.7e-131 471.5 666 42.8
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.9e-130 470.3 670 42.5
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.1e-129 466.8 656 41.6
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 8.2e-129 464.9 661 42.2
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 8.2e-129 464.9 661 42.2
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.4e-128 463.4 663 42.4
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.3e-128 462.2 659 42.6
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 8.4e-126 454.9 334 63.5
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 1.5e-122 444.1 659 40.7
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 8.2e-121 438.3 671 39.6
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 1.5e-119 434.1 656 40.5
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.2e-117 426.4 669 39.6
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 5.5e-117 425.6 660 39.1
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.6e-116 424.1 668 40.6
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.6e-116 424.1 645 42.5
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 6.7e-115 418.7 668 39.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 2.5e-114 416.8 649 39.4
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 5.9e-111 405.6 655 38.8
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 5.9e-111 405.6 334 58.7
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 7.7e-111 405.2 334 57.2
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 1.1e-109 401.4 658 37.7
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.5e-109 400.2 649 39.1
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.1e-108 397.1 655 39.5
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.7e-108 396.7 655 38.5
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.0e-107 394.8 664 38.6
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 5.1e-107 392.5 657 37.9
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.5e-106 391.0 672 37.8
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.5e-106 391.0 667 36.0
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 3.3e-106 389.8 648 37.3
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 2.1e-100 370.5 334 54.2
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 6.1e-100 369.0 677 35.9
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.0e-99 366.3 668 36.7
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 5.7e-98 362.5 680 34.4
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.7e-98 362.5 677 33.8
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 9.7e-98 361.7 660 36.5
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.3e-97 361.3 704 33.8
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 4.1e-96 356.3 616 38.1
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.1e-96 356.3 648 36.4
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 9.1e-96 355.1 661 35.7
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 3.5e-95 353.2 321 50.8
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 7.7e-95 352.1 626 36.3
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.0e-94 351.7 668 36.2
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 3.8e-94 349.7 696 33.9
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 3.2e-93 346.7 658 35.3
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.8e-88 330.9 682 33.3
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.4e-88 330.5 645 34.9
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 2.0e-87 327.4 684 33.2
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.0e-86 325.1 702 34.0
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.9e-86 323.6 645 35.0
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.9e-86 323.6 684 33.0
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 6.1e-84 315.8 241 62.7
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 5.2e-83 312.8 663 32.6
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 6.8e-83 312.4 649 34.8
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.2e-82 311.6 644 33.2
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.4e-82 310.1 626 32.7
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.2e-81 307.4 347 45.2
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 8.3e-81 305.4 377 47.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 4.1e-80 303.1 677 32.2
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.1e-80 303.1 343 45.5
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 5.4e-80 302.8 638 33.4
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 7.0e-80 302.4 639 33.5
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.9e-79 299.3 655 32.8
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 1.0e-78 298.5 622 33.3
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.9e-77 294.3 350 43.1
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.6e-76 291.2 167 82.0
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 6.4e-73 279.3 655 32.1
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-72 278.5 628 32.5
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 2.7e-71 273.9 630 31.9
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 5.9e-71 272.7 632 31.6
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 7.8e-71 272.3 632 31.8
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.7e-70 271.2 536 38.1
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 8.0e-68 262.3 328 40.9
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.9e-64 251.1 529 31.4
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 7.8e-63 245.7 342 40.6
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.8e-59 234.6 331 38.1
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.7e-57 226.9 345 38.6
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 4.9e-57 226.5 322 40.1
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.2e-55 221.9 343 38.8
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 2.8e-52 210.7 169 59.2
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 4.7e-52 209.9 331 36.6
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.1e-48 198.7 665 28.9
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 7.1e-48 196.1 307 36.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.8e-44 184.1 356 34.0
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 4.7e-44 183.3 229 42.8
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.1e-43 182.2 312 37.5
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.8e-43 181.4 525 32.2
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.4e-43 181.0 312 37.2
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.9e-43 179.1 356 33.7
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.1e-40 172.2 144 54.9
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.1e-40 172.2 232 40.9
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 3.5e-39 167.2 232 40.5
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 4.6e-39 166.8 271 36.9
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.3e-38 164.5 327 33.9
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.3e-36 158.7 323 32.8
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.1e-35 155.6 342 31.6
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.9e-34 149.1 618 27.3
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.1e-32 145.6 205 47.3
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.9e-30 137.1 218 41.7
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.8e-27 128.3 116 51.7
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 9.9e-26 122.5 145 40.0
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-23 115.5 216 34.7
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.2e-23 115.5 172 32.6
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.2e-23 115.5 172 32.6
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.6e-23 113.6 320 29.4
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.1e-22 110.2 259 31.7
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 4.8e-20 103.6 72 69.4
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-19 102.1 123 41.5
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 7.6e-18 96.3 178 36.5
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.6e-15 88.6 212 31.6
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.1e-15 88.2 206 28.6
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.0e-15 86.7 206 28.6
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-14 85.5 212 30.2
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 4.3e-13 80.5 67 56.7
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.9e-08 65.1 51 58.8
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 2.1e-07 61.6 61 42.6


User provided reference genes

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