Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 2.8e-151 538.5 259 100.0
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 1.5e-123 446.4 253 83.4
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 2.6e-120 435.6 260 81.9
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 7.5e-120 434.1 288 74.0
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 6.4e-111 404.4 252 76.6
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 1.1e-110 403.7 248 79.4
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 4.1e-110 401.7 252 77.0
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 9.2e-110 400.6 249 75.5
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 2.1e-109 399.4 246 76.4
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 3.5e-109 398.7 253 75.5
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 3.5e-109 398.7 246 77.2
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 7.8e-109 397.5 249 76.3
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 1.9e-107 392.9 249 74.3
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 3.3e-107 392.1 246 76.4
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 5.6e-107 391.3 245 75.5
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 1.6e-106 389.8 249 74.3
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 2.1e-106 389.4 251 74.1
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 6.2e-106 387.9 229 77.3
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 1.4e-105 386.7 249 73.9
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 5.2e-105 384.8 249 73.9
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 6.8e-105 384.4 248 73.8
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 6.8e-105 384.4 253 71.9
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 8.9e-105 384.0 249 73.5
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 2.6e-104 382.5 208 86.5
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 2.6e-104 382.5 250 72.4
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 5.8e-104 381.3 249 73.5
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 1.3e-103 380.2 250 72.4
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 2.9e-103 379.0 249 72.7
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 3.7e-103 378.6 248 74.2
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 6.4e-103 377.9 248 72.2
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 6.4e-103 377.9 246 74.0
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 9.2e-102 374.0 248 73.0
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 1.2e-101 373.6 250 75.2
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 1.6e-101 373.2 250 72.0
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 1.6e-101 373.2 249 71.9
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 1.6e-101 373.2 253 70.4
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 2.1e-101 372.9 246 72.8
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 2.7e-101 372.5 250 72.8
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 4.6e-101 371.7 246 73.6
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 4.6e-101 371.7 246 74.8
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 4.6e-101 371.7 253 69.6
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 6.0e-101 371.3 253 70.4
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 7.8e-101 370.9 250 69.6
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 1.7e-100 369.8 246 72.8
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 2.3e-100 369.4 253 70.0
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 2.3e-100 369.4 250 72.4
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 2.3e-100 369.4 252 71.4
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 3.0e-100 369.0 248 73.0
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 3.0e-100 369.0 249 71.1
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 3.0e-100 369.0 255 69.8
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 3.9e-100 368.6 253 68.8
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 6.6e-100 367.9 256 70.3
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 8.6e-100 367.5 254 70.5
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 1.1e-99 367.1 250 70.8
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 1.5e-99 366.7 250 69.6
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 1.5e-99 366.7 245 71.0
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 1.5e-99 366.7 256 70.3
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 1.9e-99 366.3 248 71.8
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 1.9e-99 366.3 248 72.2
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 3.3e-99 365.5 255 69.0
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 1.6e-98 363.2 246 70.7
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 2.1e-98 362.8 248 71.0
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 3.6e-98 362.1 248 71.0
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 4.7e-98 361.7 199 85.9
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 8.1e-98 360.9 248 70.6
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.4e-97 360.1 272 66.9
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 8.9e-97 357.5 259 66.0
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 5.8e-96 354.8 309 58.9
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 2.2e-95 352.8 249 67.5
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 2.1e-93 346.3 246 68.3
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 1.1e-91 340.5 256 67.2
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.5e-91 340.1 249 67.5
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 2.5e-91 339.3 245 66.9
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 1.2e-90 337.0 238 66.4
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.6e-90 335.5 261 61.3
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 4.0e-89 332.0 248 65.3
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 5.3e-89 331.6 250 68.8
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 1.2e-88 330.5 302 56.3
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 1.1e-83 313.9 275 58.5
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 4.8e-82 308.5 245 61.6
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 3.1e-81 305.8 257 61.5
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 9.0e-81 304.3 285 53.0
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 5.8e-80 301.6 250 59.2
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 4.9e-79 298.5 259 59.8
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 1.1e-78 297.4 248 61.3
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 1.9e-78 296.6 197 73.1
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 2.4e-78 296.2 247 62.3
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 3.2e-78 295.8 189 74.1
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 4.2e-78 295.4 201 71.6
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 4.3e-75 285.4 187 74.3
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 4.0e-73 278.9 279 53.4
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 2.1e-69 266.5 270 52.2
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 1.3e-68 263.8 217 59.4
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 5.1e-68 261.9 212 59.4
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 2.1e-66 256.5 294 50.7
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 7.6e-64 248.1 283 47.3
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 2.2e-63 246.5 251 51.0
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 7.2e-54 214.9 137 73.7
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 8.8e-52 208.0 139 71.2
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 6.3e-50 201.8 182 56.6
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 1.5e-48 197.2 118 78.0
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 2.6e-27 126.7 89 70.8
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 4.4e-27 125.9 96 62.5
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 2.2e-26 123.6 90 66.7
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 1.2e-11 74.7 36 83.3
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 4.5e-08 62.8 198 25.8
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 9.5e-06 55.1 120 25.8


User provided reference genes

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