Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G014700 Theobroma cacao HOM05D001831 ORTHO05D029131 3.6e-178 628.2 340 100.0
Thecc.05G014600 Theobroma cacao HOM05D001831 ORTHO05D029131 7.3e-22 109.0 81 69.1
Thecc.10G118200 Theobroma cacao HOM05D001831 ORTHO05D029131 6.4e-18 95.9 77 61.0
Ciclev10022027m.g Citrus clementina HOM05D001831 ORTHO05D001835 6.6e-15 85.9 79 57.0
Manes.01G060300 Manihot esculenta HOM05D001831 ORTHO05D001835 4.7e-13 79.7 70 60.0
Manes.02G021494 Manihot esculenta HOM05D001831 ORTHO05D001835 1.8e-12 77.8 78 48.7
Potri.003G130100 Populus trichocarpa HOM05D001831 ORTHO05D001835 1.5e-11 74.7 78 48.7
Thecc.03G281900 Theobroma cacao HOM05D001831 ORTHO05D001835 1.5e-11 74.7 74 50.0
Potri.001G101600 Populus trichocarpa HOM05D001831 ORTHO05D001835 7.5e-11 72.4 72 50.0
Gohir.D09G186400 Gossypium hirsutum HOM05D001831 ORTHO05D001835 1.3e-10 71.6 75 46.7
Duzib068G0782 Durio zibethinus HOM05D001831 ORTHO05D001835 1.7e-10 71.2 75 48.0
Gorai.006G209100 Gossypium raimondii HOM05D001831 ORTHO05D001835 1.7e-10 71.2 74 47.3
Cpa.g.sc214.7 Carica papaya HOM05D001831 ORTHO05D001835 2.2e-10 70.9 75 52.0
Duzib205G0405 Durio zibethinus HOM05D001831 ORTHO05D001835 2.2e-10 70.9 68 52.9
Gohir.A09G192100 Gossypium hirsutum HOM05D001831 ORTHO05D001835 2.2e-10 70.9 75 46.7
Atru.chr9.2157 Acer truncatum HOM05D001831 ORTHO05D001835 2.9e-10 70.5 78 47.4
Sabra01G0076600 Salix brachista HOM05D001831 ORTHO05D001835 3.7e-10 70.1 72 48.6
Gohir.A12G230800 Gossypium hirsutum HOM05D001831 ORTHO05D001835 4.9e-10 69.7 75 45.3
Aa31LG2G980 Aethionema arabicum HOM05D001831 ORTHO05D001835 6.4e-10 69.3 64 51.6
TWI38G0047 Tripterygium wilfordii HOM05D001831 ORTHO05D001835 6.4e-10 69.3 76 50.0
QL12p032462 Quercus lobata HOM05D001831 ORTHO05D001835 8.3e-10 68.9 81 49.4
Gorai.008G248200 Gossypium raimondii HOM05D001831 ORTHO05D001835 3.2e-09 67.0 75 44.0
Sabra03G0092500 Salix brachista HOM05D001831 ORTHO05D001835 3.2e-09 67.0 72 47.2
Gohir.D03G149800 Gossypium hirsutum HOM05D001831 ORTHO05D001835 5.4e-09 66.2 73 50.7
PGR042G1581 Punica granatum HOM05D001831 ORTHO05D001835 9.2e-09 65.5 67 55.2
Gorai.003G157100 Gossypium raimondii HOM05D001831 ORTHO05D001835 1.2e-08 65.1 73 49.3
Gohir.A03G019200 Gossypium hirsutum HOM05D001831 ORTHO05D001835 2.1e-08 64.3 73 49.3
HPP92_025968 Vanilla planifolia HOM05D001831 ORTHO05D001835 2.1e-08 64.3 76 47.4
COL.COLO4_14520 Corchorus olitorius HOM05D001831 ORTHO05D029131 6.0e-08 62.8 73 50.7
Migut.E01074 Erythranthe guttata HOM05D001831 ORTHO05D001835 6.0e-08 62.8 74 45.9
MSTRG.13850 Avicennia marina HOM05D001831 ORTHO05D001835 1.0e-07 62.0 70 47.1
MSTRG.1855 Avicennia marina HOM05D001831 ORTHO05D001835 1.0e-07 62.0 83 43.4
MD06G1087400 Malus domestica HOM05D001831 ORTHO05D001835 1.0e-07 62.0 63 52.4
CiPaw.11G132800 Carya illinoinensis HOM05D001831 ORTHO05D001835 1.7e-07 61.2 75 44.0
Haze_08808 Corylus avellana HOM05D001831 ORTHO05D001835 1.7e-07 61.2 69 46.4
CiPaw.12G091400 Carya illinoinensis HOM05D001831 ORTHO05D001835 2.3e-07 60.8 76 48.7
Dinv37621 Davidia involucrata HOM05D001831 ORTHO05D001835 2.3e-07 60.8 70 48.6
MD14G1108300 Malus domestica HOM05D001831 ORTHO05D001835 3.0e-07 60.5 63 50.8
Prupe.5G103700 Prunus persica HOM05D001831 ORTHO05D001835 3.9e-07 60.1 69 44.9
FvH4_5g02810 Fragaria vesca HOM05D001831 ORTHO05D001835 5.1e-07 59.7 70 47.1
GSVIVG01019388001 Vitis vinifera HOM05D001831 ORTHO05D001835 5.1e-07 59.7 84 41.7
RcHm_v2.0_Chr7g0197141 Rosa chinensis HOM05D001831 ORTHO05D001835 6.6e-07 59.3 70 45.7
THA.LOC104823590 Tarenaya hassleriana HOM05D001831 ORTHO05D001835 6.6e-07 59.3 94 37.2
MSTRG.11973 Avicennia marina HOM05D001831 ORTHO05D001835 8.6e-07 58.9 84 39.3
Cfa012205 Carpinus fangiana HOM05D001831 ORTHO05D001835 8.6e-07 58.9 79 41.8
Hma1.2p1_0377F.1_g139420 Hydrangea macrophylla HOM05D001831 ORTHO05D001835 3.3e-06 57.0 76 43.4
Hund11453 Selenicereus undatus HOM05D001831 ORTHO05D001835 3.3e-06 57.0 74 41.9
TAR629G1175 Trochodendron aralioides HOM05D001831 ORTHO05D001835 3.3e-06 57.0 70 44.3
CAN.G532.5 Capsicum annuum HOM05D001831 ORTHO05D001835 4.3e-06 56.6 67 47.8
Cc08_g14970 Coffea canephora HOM05D001831 ORTHO05D001835 4.3e-06 56.6 73 43.8
SalBow1G2216 Salvia bowleyana HOM05D001831 ORTHO05D001835 5.6e-06 56.2 70 42.9
Nitab4.5_0013970g0010 Nicotiana tabacum HOM05D001831 ORTHO05D001835 7.3e-06 55.8 64 48.4


User provided reference genes

Program Settings