Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 1.1e-226 789.6 408 100.0
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.6e-164 583.2 409 77.3
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 4.3e-162 575.1 410 77.1
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.1e-122 444.1 408 65.0
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.3e-122 442.2 408 65.0
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.0e-115 421.0 408 63.2
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 6.1e-100 368.6 417 60.0
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.6e-84 317.4 407 50.9
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 8.9e-83 311.6 407 50.4
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 2.4e-64 250.4 410 42.7
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.1e-63 247.3 440 41.6
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 5.6e-61 239.2 403 43.4
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 4.7e-60 236.1 424 40.6
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.8e-59 234.2 403 43.4
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 2.6e-58 230.3 422 39.6
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.2e-57 227.3 435 41.4
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.7e-57 226.5 439 39.9
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.1e-56 223.0 421 39.7
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 9.6e-53 211.8 438 37.7
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 2.8e-52 210.3 437 39.4
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 2.2e-49 200.7 435 37.9
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 8.4e-49 198.7 414 37.9
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.1e-48 198.4 427 40.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 9.3e-48 195.3 424 36.8
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.3e-46 190.7 411 36.5
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.5e-45 187.2 427 36.3
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.8e-44 183.7 424 35.8
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 6.2e-44 182.6 416 37.7
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.4e-43 180.6 425 35.3
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 5.3e-43 179.5 433 37.0
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.4e-42 176.8 421 36.8
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.8e-42 176.0 424 36.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 7.6e-42 175.6 403 36.2
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.9e-41 172.9 422 37.0
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.1e-40 171.8 416 34.1
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.2e-40 170.2 412 35.4
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.2e-40 169.9 475 34.1
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 4.2e-40 169.9 435 32.6
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 3.5e-39 166.8 416 33.2
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 3.0e-38 163.7 428 35.5
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 2.5e-37 160.6 438 34.2
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 7.3e-37 159.1 419 34.8
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 5.3e-35 152.9 434 32.3
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 9.0e-35 152.1 408 34.3
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 9.0e-35 152.1 407 33.2
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.2e-34 151.8 415 33.3
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.0e-34 151.0 380 36.1
Gohir.A04G091850 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.9e-34 148.7 275 42.5
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.7e-33 147.9 434 32.0
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 2.2e-33 147.5 430 32.8
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 2.2e-33 147.5 417 31.2
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.8e-33 146.7 418 32.5
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.4e-33 145.6 330 39.1
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 8.4e-33 145.6 420 32.9
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.4e-32 144.8 436 34.2
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.9e-32 144.4 407 33.2
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.4e-32 144.1 430 32.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 3.2e-32 143.7 430 31.9
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 5.4e-32 142.9 425 31.3
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.5e-31 140.2 446 29.8
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.8e-30 137.9 424 31.4
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 5.1e-30 136.3 405 32.1
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.9e-29 134.4 429 31.9
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 2.5e-29 134.0 446 30.5
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 2.5e-29 134.0 439 31.0
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 5.6e-29 132.9 415 31.3
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 9.6e-29 132.1 419 31.0
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.3e-28 131.7 427 30.2
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.3e-28 131.7 402 30.3
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 1.6e-28 131.3 434 31.6
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.8e-28 130.6 426 29.8
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.8e-28 130.6 426 29.6
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.8e-28 130.6 413 30.8
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 4.8e-28 129.8 423 32.9
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.1e-27 128.6 423 29.6
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.5e-26 124.8 410 29.0
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.5e-26 124.8 428 32.9
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.5e-26 123.2 403 31.5
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.5e-26 123.2 413 29.8
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 7.6e-26 122.5 396 28.5
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 7.6e-26 122.5 396 28.5
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-25 122.1 409 29.1
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.0e-25 122.1 429 28.4
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.0e-25 122.1 414 29.7
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.3e-25 121.7 413 28.6
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 3.8e-25 120.2 433 28.6
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.8e-25 120.2 417 28.8
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 8.4e-25 119.0 439 29.8
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 1.1e-24 118.6 406 30.8
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.1e-24 118.6 434 28.8
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.9e-24 117.9 435 29.0
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 2.5e-24 117.5 411 30.4
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 7.1e-24 115.9 445 29.7
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 1.2e-23 115.2 402 29.4
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 1.6e-23 114.8 439 29.8
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 3.5e-23 113.6 425 28.7
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 3.5e-23 113.6 430 28.4
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 3.5e-23 113.6 428 27.6
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.0e-23 112.8 406 28.1
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 7.9e-23 112.5 411 26.3
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.8e-22 111.3 361 33.2
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 3.9e-22 110.2 421 28.0
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.1e-22 109.8 361 33.0
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 8.7e-22 109.0 326 31.6
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 8.7e-22 109.0 397 28.2
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 1.9e-21 107.8 443 30.5
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 7.4e-21 105.9 439 28.2
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 7.4e-21 105.9 412 29.1
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.6e-21 105.5 414 28.7
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.3e-20 105.1 415 28.0
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.6e-20 104.8 414 28.7
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 2.8e-20 104.0 409 29.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 4.8e-20 103.2 426 28.6
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 6.2e-20 102.8 423 28.6
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 8.2e-20 102.4 442 28.5
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 8.2e-20 102.4 405 29.6
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 2.4e-19 100.9 421 27.6
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 3.1e-19 100.5 403 28.5
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 3.1e-19 100.5 439 28.7
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 4.1e-19 100.1 419 28.4
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 4.1e-19 100.1 418 26.8
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 4.1e-19 100.1 407 27.8
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 1.2e-18 98.6 403 27.0
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 3.4e-18 97.1 415 28.2
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 4.5e-18 96.7 122 45.1
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 7.6e-18 95.9 400 24.5
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.3e-17 95.1 412 26.7
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 1.3e-17 95.1 414 28.0
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.9e-17 94.0 390 26.7
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.9e-17 94.0 457 27.6
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.8e-17 93.6 414 27.3
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 3.8e-17 93.6 346 28.9
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 3.8e-17 93.6 400 27.0
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 6.5e-17 92.8 451 26.6
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 6.5e-17 92.8 440 29.5
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 8.4e-17 92.4 389 25.7
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 8.4e-17 92.4 412 26.5
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.1e-16 92.0 397 23.4
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.2e-16 90.5 411 26.8
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 4.2e-16 90.1 193 34.7
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 4.2e-16 90.1 429 26.3
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 5.5e-16 89.7 431 27.6
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 7.1e-16 89.4 423 26.2
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 7.1e-16 89.4 300 30.7
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.2e-15 88.6 428 26.9
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.6e-15 88.2 413 26.4
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 2.1e-15 87.8 426 24.2
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 2.7e-15 87.4 268 29.5
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.0e-14 85.5 416 26.0
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 1.8e-14 84.7 366 28.1
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea HOM05D003726 ORTHO05D003520 2.3e-14 84.3 387 28.9
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.3e-14 84.3 384 26.0
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.0e-14 84.0 419 26.7
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 3.9e-14 83.6 421 25.2
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 3.9e-14 83.6 409 28.1
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 3.9e-14 83.6 419 26.7
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 3.3e-13 80.5 414 27.1
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 4.3e-13 80.1 435 28.5
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 9.7e-13 79.0 450 26.0
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 2.2e-12 77.8 283 30.0
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 6.3e-12 76.3 275 31.3
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 8.2e-12 75.9 304 27.3
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.1e-11 73.6 406 26.4
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 6.9e-11 72.8 440 26.1
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 9.0e-11 72.4 406 24.9
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 9.0e-11 72.4 183 35.0
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 1.5e-10 71.6 332 28.9
Actinidia20741 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.0e-10 71.2 282 29.8
Hund14289 Selenicereus undatus HOM05D029928 ORTHO05D003520 2.6e-10 70.9 361 25.8
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 7.7e-10 69.3 400 25.5
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.0e-09 68.9 408 26.7
BraA02t04692Z Brassica rapa HOM05D013727 ORTHO05D003520 1.3e-09 68.6 432 25.5
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 2.9e-09 67.4 414 24.9
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 3.8e-09 67.0 278 27.7
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 6.5e-09 66.2 425 24.5
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 4.2e-08 63.5 414 27.3
Dinv01729 Davidia involucrata HOM05D003726 ORTHO05D003520 2.1e-07 61.2 262 30.5
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 4.6e-07 60.1 392 26.5
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.4e-06 58.5 420 25.5
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 3.0e-06 57.4 402 24.9
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 3.0e-06 57.4 410 23.4
TAR636G2889 Trochodendron aralioides HOM05D003726 ORTHO05D003520 5.1e-06 56.6 205 29.8


User provided reference genes

Program Settings