Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 1.3e-88 329.7 165 100.0
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 8.4e-32 141.0 80 83.8
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 4.6e-30 135.2 79 81.0
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.4e-26 122.9 78 74.4
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 2.4e-26 122.9 78 74.4
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 4.0e-26 122.1 79 70.9
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 5.3e-26 121.7 79 72.2
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 5.3e-26 121.7 79 72.2
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.3e-24 117.1 78 71.8
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 3.8e-24 115.5 80 68.8
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 3.8e-24 115.5 111 56.8
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 4.9e-24 115.2 79 69.6
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 6.4e-24 114.8 78 69.2
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 1.4e-23 113.6 78 69.2
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 1.9e-23 113.2 104 52.9
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 1.9e-23 113.2 79 68.4
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 1.9e-23 113.2 75 69.3
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 2.4e-23 112.8 79 68.4
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 3.2e-23 112.5 156 45.5
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 7.1e-23 111.3 99 53.5
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 1.6e-22 110.2 148 43.2
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 2.1e-22 109.8 79 64.6
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 2.1e-22 109.8 79 64.6
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 2.1e-22 109.8 78 66.7
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 2.7e-22 109.4 75 68.0
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 2.7e-22 109.4 76 71.1
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 3.5e-22 109.0 79 62.0
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 3.5e-22 109.0 79 62.0
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 3.5e-22 109.0 79 64.6
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 4.6e-22 108.6 77 64.9
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 6.0e-22 108.2 79 60.8
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 7.9e-22 107.8 79 60.8
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 7.9e-22 107.8 79 64.6
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 7.9e-22 107.8 79 63.3
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 7.9e-22 107.8 79 68.4
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 1.0e-21 107.5 79 63.3
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 1.3e-21 107.1 79 62.0
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 1.3e-21 107.1 156 42.3
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 1.8e-21 106.7 111 52.3
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 1.8e-21 106.7 112 50.0
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 1.8e-21 106.7 79 63.3
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 1.8e-21 106.7 79 63.3
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 2.3e-21 106.3 161 40.4
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 3.0e-21 105.9 77 64.9
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 3.0e-21 105.9 79 62.0
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 3.9e-21 105.5 79 60.8
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 3.9e-21 105.5 112 48.2
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 3.9e-21 105.5 79 60.8
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 5.1e-21 105.1 154 40.9
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 6.7e-21 104.8 124 46.8
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 6.7e-21 104.8 79 60.8
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 6.7e-21 104.8 79 62.0
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 6.7e-21 104.8 79 62.0
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 6.7e-21 104.8 76 61.8
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 1.1e-20 104.0 79 64.6
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 1.5e-20 103.6 112 46.4
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 1.5e-20 103.6 156 40.4
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 1.5e-20 103.6 156 41.0
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 1.5e-20 103.6 155 40.0
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 1.5e-20 103.6 79 63.3
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 1.9e-20 103.2 79 60.8
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 1.9e-20 103.2 78 59.0
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 2.5e-20 102.8 80 61.2
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 2.5e-20 102.8 72 66.7
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.3e-20 102.4 79 58.2
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 3.3e-20 102.4 79 58.2
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 3.3e-20 102.4 72 68.1
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 3.3e-20 102.4 79 65.8
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 3.3e-20 102.4 72 65.3
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 3.3e-20 102.4 79 62.0
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 4.3e-20 102.1 155 39.4
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 4.3e-20 102.1 80 61.2
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 4.3e-20 102.1 72 66.7
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 4.3e-20 102.1 163 39.3
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 5.6e-20 101.7 78 62.8
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 5.6e-20 101.7 79 59.5
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 7.4e-20 101.3 78 64.1
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 7.4e-20 101.3 72 66.7
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 9.6e-20 100.9 79 57.0
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 9.6e-20 100.9 79 58.2
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 9.6e-20 100.9 79 58.2
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 9.6e-20 100.9 95 51.6
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.3e-19 100.5 72 66.7
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 1.3e-19 100.5 73 63.0
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 2.1e-19 99.8 79 62.0
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 2.8e-19 99.4 164 38.4
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 2.8e-19 99.4 73 61.6
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 3.6e-19 99.0 78 55.1
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 3.6e-19 99.0 73 64.4
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 4.8e-19 98.6 78 56.4
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 4.8e-19 98.6 78 56.4
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.1e-19 97.8 79 60.8
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 1.1e-18 97.4 76 57.9
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 1.1e-18 97.4 73 58.9
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 1.8e-18 96.7 159 37.1
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 2.4e-18 96.3 74 58.1
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 2.4e-18 96.3 76 56.6
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 4.0e-18 95.5 73 58.9
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 5.3e-18 95.1 92 52.2
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 5.3e-18 95.1 99 49.5
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 6.9e-18 94.7 92 51.1
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 1.2e-17 94.0 98 46.9
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.2e-17 94.0 115 42.6
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 1.2e-17 94.0 78 56.4
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 2.0e-17 93.2 98 49.0
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 2.6e-17 92.8 99 49.5
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 5.8e-17 91.7 75 57.3
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 2.9e-16 89.4 71 57.7
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 2.9e-16 89.4 69 56.5
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 2.9e-16 89.4 71 57.7
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 4.9e-16 88.6 65 64.6
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.4e-16 87.8 70 54.3
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 5.5e-15 85.1 75 48.0
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 9.3e-15 84.3 100 44.0
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 1.6e-14 83.6 72 52.8
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 8.7e-13 77.8 56 60.7
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-11 71.6 73 49.3
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.4e-10 70.5 78 46.2
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 2.0e-09 66.6 64 46.9
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 1.7e-08 63.5 71 42.3
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 2.9e-08 62.8 71 42.3
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 3.2e-07 59.3 62 50.0
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 9.3e-07 57.8 42 61.9
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 6.0e-06 55.1 58 46.6


User provided reference genes

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