Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 7.3e-170 600.5 310 100.0
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.5e-146 523.1 311 86.8
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 1.2e-140 503.4 312 84.0
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 6.6e-139 497.7 311 82.3
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 7.3e-138 494.2 311 81.7
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 3.6e-137 491.9 311 81.4
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 9.9e-135 483.8 293 85.7
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.9e-133 479.6 311 81.4
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 9.3e-133 477.2 311 80.1
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.3e-130 468.8 311 79.7
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 1.8e-107 393.3 316 67.1
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 6.7e-99 364.8 311 61.1
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 5.9e-95 351.7 324 59.0
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 3.8e-94 349.0 322 58.7
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.4e-93 347.1 319 60.8
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 2.5e-93 346.3 321 58.3
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 9.4e-93 344.4 317 60.9
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 1.4e-91 340.5 318 56.6
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 2.3e-91 339.7 325 58.2
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 5.1e-91 338.6 319 58.0
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 2.8e-89 332.8 314 58.9
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 8.2e-89 331.3 313 58.1
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 3.4e-87 325.9 306 57.5
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 3.8e-86 322.4 317 57.1
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 1.4e-85 320.5 319 56.1
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 3.2e-85 319.3 318 55.7
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 5.5e-85 318.5 314 55.1
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 2.1e-84 316.6 309 57.3
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 2.7e-84 316.2 324 52.8
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 3.6e-84 315.8 308 55.8
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 6.1e-84 315.1 312 56.4
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 8.0e-84 314.7 316 53.2
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 3.0e-83 312.8 313 53.4
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 5.2e-83 312.0 324 54.9
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 1.1e-82 310.8 314 52.9
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 2.0e-82 310.1 320 53.4
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 2.6e-82 309.7 316 56.6
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 3.3e-82 309.3 309 56.0
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 4.4e-82 308.9 312 55.8
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 7.4e-82 308.1 315 54.6
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 7.4e-82 308.1 321 54.2
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 7.4e-82 308.1 318 54.1
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 9.7e-82 307.8 313 53.0
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 2.2e-81 306.6 300 54.7
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 3.7e-81 305.8 314 52.5
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 6.3e-81 305.1 337 52.2
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 8.2e-81 304.7 314 53.5
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.4e-80 303.9 315 53.3
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 2.4e-80 303.1 318 54.4
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 3.1e-80 302.8 326 53.1
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 5.3e-80 302.0 309 53.1
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.6e-79 300.4 338 51.8
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 1.6e-79 300.4 313 52.4
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.6e-79 300.4 301 55.8
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.6e-79 300.4 315 51.4
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.0e-79 300.1 314 54.5
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 2.0e-79 300.1 316 53.8
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.6e-79 299.7 314 54.5
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 5.9e-79 298.5 331 50.8
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 1.9e-77 293.5 316 52.5
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 3.2e-77 292.7 313 53.0
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 5.5e-77 292.0 330 51.5
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 4.7e-76 288.9 316 51.3
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 1.0e-75 287.7 314 53.2
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.0e-75 287.7 314 53.2
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 8.8e-75 284.6 313 51.8
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.2e-73 280.0 314 52.2
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 2.2e-73 280.0 318 48.7
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.2e-73 280.0 304 52.3
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 8.2e-73 278.1 318 48.4
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 1.4e-72 277.3 303 48.8
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 5.3e-72 275.4 322 49.4
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 3.5e-71 272.7 313 48.2
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 4.5e-71 272.3 300 49.7
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 4.5e-71 272.3 310 50.0
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.0e-70 271.2 308 50.3
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 2.2e-70 270.0 313 47.6
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 1.5e-69 267.3 299 49.5
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 1.2e-68 264.2 312 49.7
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 2.1e-68 263.5 305 47.2
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 1.2e-66 257.7 326 44.5
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.5e-66 257.3 302 48.7
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 5.7e-66 255.4 180 75.0
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 1.3e-65 254.2 303 47.2
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 2.2e-65 253.4 306 46.4
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 1.4e-64 250.8 298 50.0
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 9.1e-64 248.1 298 46.6
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 3.8e-62 242.7 303 44.9
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 8.6e-62 241.5 308 47.1
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 8.6e-62 241.5 308 46.8
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 1.6e-60 237.3 296 46.6
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 1.8e-59 233.8 317 42.6
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 2.0e-58 230.3 303 45.2
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 2.8e-57 226.5 310 42.9
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 6.3e-57 225.3 311 44.4
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 7.0e-56 221.9 304 45.7
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 3.8e-54 216.1 304 44.1
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 5.0e-54 215.7 321 42.4
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 1.5e-50 204.1 298 43.6
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 3.7e-49 199.5 197 55.3
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 1.4e-43 181.0 390 33.1
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 3.1e-43 179.9 243 43.2
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 3.7e-41 172.9 292 37.7
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 3.7e-41 172.9 186 51.6
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 6.0e-39 165.6 181 49.7
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 3.4e-34 149.8 343 32.9
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 1.9e-32 144.1 162 50.6
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 7.8e-31 138.7 304 35.5
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 1.1e-29 134.8 134 51.5
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 2.5e-29 133.7 302 34.8
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 3.8e-25 119.8 385 25.5
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 4.1e-24 116.3 97 62.9
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 5.4e-24 115.9 302 32.5
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 5.1e-22 109.4 73 74.0
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 4.3e-21 106.3 195 40.0
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 9.0e-19 98.6 283 30.0
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 1.5e-13 81.3 78 48.7
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 1.9e-13 80.9 98 41.8
VMungo1309G1345 Vigna mungo HOM05D006207 ORTHO05D007868 6.9e-11 72.4 70 48.6
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 9.9e-10 68.6 138 33.3
VMungo0647G0753 Vigna mungo HOM05D006207 ORTHO05D007868 2.2e-09 67.4 124 36.3
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.4e-08 64.7 106 34.0
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 3.2e-08 63.5 78 46.2
SalBow1G6530 Salvia bowleyana HOM05D006207 ORTHO05D007868 2.3e-06 57.4 101 36.6
SEGI_02198 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 6.7e-06 55.8 94 37.2


User provided reference genes

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