Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 5.8e-189 664.1 334 100.0
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 1.3e-140 503.4 347 74.6
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 7.2e-131 471.1 351 70.7
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 3.0e-129 465.7 351 69.8
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 8.7e-129 464.2 351 69.8
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 5.9e-125 451.4 309 78.3
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 1.6e-109 400.2 355 59.2
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 6.7e-105 384.8 352 58.0
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 5.7e-104 381.7 349 59.6
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.1e-102 375.9 350 56.0
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 2.2e-100 369.8 344 57.0
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 1.5e-99 367.1 353 54.4
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 2.1e-98 363.2 352 55.7
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 3.6e-98 362.5 344 55.8
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 2.3e-97 359.8 347 57.1
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 5.2e-97 358.6 340 55.0
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 1.5e-96 357.1 343 54.8
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 7.5e-96 354.8 344 55.2
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 9.8e-96 354.4 354 54.2
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 1.1e-94 350.9 340 54.1
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.4e-94 350.5 348 54.0
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 1.4e-94 350.5 347 54.5
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 1.4e-94 350.5 347 53.6
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.8e-94 350.1 350 54.3
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 2.7e-93 346.3 343 54.2
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 3.5e-93 345.9 342 54.7
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 5.9e-93 345.1 351 52.7
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 2.9e-92 342.8 359 53.5
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 3.8e-92 342.4 340 55.6
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 8.5e-92 341.3 353 52.1
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 1.1e-91 340.9 347 52.4
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 3.2e-91 339.3 339 53.1
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.2e-91 339.3 318 56.6
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 5.5e-91 338.6 348 54.3
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 5.5e-91 338.6 345 53.9
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 1.6e-90 337.0 357 52.4
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 3.6e-90 335.9 344 52.0
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.4e-89 334.0 359 51.5
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 1.8e-89 333.6 345 52.2
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.0e-89 332.8 342 54.1
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 5.2e-89 332.0 366 51.6
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.8e-89 331.6 359 51.8
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 8.8e-89 331.3 348 50.9
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 2.0e-88 330.1 354 50.6
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 2.6e-88 329.7 353 51.6
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 7.5e-88 328.2 340 51.5
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 9.8e-88 327.8 354 49.7
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 1.3e-87 327.4 348 52.3
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 2.2e-87 326.6 345 51.0
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 6.3e-87 325.1 340 52.4
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.3e-87 325.1 342 53.8
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 1.1e-86 324.3 351 50.4
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 1.1e-86 324.3 345 52.2
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 1.1e-86 324.3 354 51.7
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.8e-86 323.6 353 50.1
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 3.1e-86 322.8 352 50.3
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 3.1e-86 322.8 348 51.4
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 5.4e-86 322.0 353 51.3
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 7.0e-86 321.6 353 50.7
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 9.2e-86 321.2 346 51.2
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 2.0e-85 320.1 345 51.6
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 2.7e-85 319.7 361 50.7
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 3.5e-85 319.3 353 51.3
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 3.5e-85 319.3 354 50.8
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 4.5e-85 318.9 339 51.6
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.0e-84 317.8 317 52.4
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 1.7e-84 317.0 352 50.9
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 2.3e-84 316.6 349 50.4
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 3.8e-84 315.8 339 51.3
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 3.8e-84 315.8 348 49.1
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 8.6e-84 314.7 342 52.3
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 8.6e-84 314.7 348 49.4
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 1.5e-83 313.9 350 49.7
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 1.9e-83 313.5 353 49.6
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.9e-83 313.5 352 50.9
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 7.3e-83 311.6 347 50.1
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 9.5e-83 311.2 341 48.7
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 9.5e-83 311.2 350 49.1
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 1.2e-82 310.8 347 50.1
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 1.2e-82 310.8 313 52.4
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 1.6e-82 310.5 345 49.6
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 2.1e-82 310.1 349 49.3
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 4.7e-82 308.9 353 49.0
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 1.4e-81 307.4 352 50.0
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.4e-81 307.4 353 49.9
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 1.8e-81 307.0 345 49.6
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 3.0e-81 306.2 353 49.6
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 5.2e-81 305.4 353 49.6
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 1.2e-80 304.3 313 52.1
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 2.6e-80 303.1 355 48.5
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 2.6e-80 303.1 312 51.0
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 2.2e-79 300.1 337 49.6
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 3.7e-79 299.3 349 47.9
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 6.4e-79 298.5 351 49.0
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 8.3e-79 298.1 379 45.9
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 3.2e-78 296.2 347 49.6
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 5.4e-78 295.4 323 50.5
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 2.0e-77 293.5 349 46.1
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 3.9e-76 289.3 314 51.6
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 3.9e-76 289.3 355 48.5
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 4.3e-75 285.8 354 48.0
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.2e-74 284.3 347 45.2
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 1.4e-73 280.8 311 49.2
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.8e-73 280.4 362 46.4
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 4.0e-73 279.3 309 51.1
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 5.8e-72 275.4 352 44.3
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 5.8e-72 275.4 465 39.1
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 7.5e-72 275.0 191 72.3
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 9.2e-70 268.1 304 49.7
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 2.7e-69 266.5 344 45.9
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 7.8e-69 265.0 348 44.0
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 9.5e-67 258.1 336 47.6
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 1.1e-65 254.6 190 67.4
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 8.9e-65 251.5 293 47.1
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 2.6e-64 250.0 254 52.8
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 6.4e-63 245.4 325 42.8
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 9.2e-62 241.5 383 40.7
Hund11200 Selenicereus undatus HOM05D003636 ORTHO05D005160 7.3e-59 231.9 322 41.3
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 1.1e-57 228.0 297 46.5
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 5.4e-54 215.7 213 48.8
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 1.7e-52 210.7 190 56.3
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 3.4e-48 196.4 347 38.3
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 3.3e-43 179.9 138 58.0
ATR0681G292 Amborella trichopoda HOM05D003636 ORTHO05D005160 2.6e-40 170.2 155 49.7
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 8.4e-39 165.2 453 34.0
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 5.4e-38 162.5 341 32.8
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 2.1e-37 160.6 233 39.1
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 1.5e-35 154.5 127 56.7
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 8.4e-31 138.7 240 38.8
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 2.4e-30 137.1 205 36.1
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 8.4e-23 112.1 93 50.5
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 1.0e-20 105.1 192 33.3
Ca_11084_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 5.3e-17 92.8 187 34.2
Ca_14184_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.7e-15 87.8 189 33.9
PRCOL_00006475 Prasinoderma coloniale HOM05D003636 ORTHO05D005160 1.7e-15 87.8 152 30.9
Hma1.2p1_2670F.1_g326620 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 3.2e-14 83.6 143 39.2
THA.LOC104823120 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 3.2e-14 83.6 194 34.0
AagrBONN_evm.TU.Sc2ySwM_228.671 Anthoceros agrestis HOM05D003636 ORTHO05D005160 2.1e-13 80.9 85 43.5
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 1.8e-12 77.8 146 40.4
QL06p015868 Quercus lobata HOM05D003636 ORTHO05D005160 6.7e-12 75.9 77 48.1
Actinidia08440 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.1e-11 75.1 41 75.6
Lj2C973G0 Lonicera japonica HOM05D003636 ORTHO05D005160 1.1e-11 75.1 54 63.0
CiPaw.02G116000 Carya illinoinensis HOM05D003636 ORTHO05D005160 9.7e-11 72.0 53 56.6
Hund02551 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.5e-08 64.7 151 31.8
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.0e-07 62.0 115 33.0
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 1.0e-07 62.0 94 33.0
SpUn1110_0010 Schrenkiella parvula HOM05D003636 ORTHO05D005160 1.7e-07 61.2 42 59.5
Hund13040 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.7e-07 61.2 144 31.2
TAR633G1121 Trochodendron aralioides HOM05D003636 ORTHO05D026550 6.5e-07 59.3 96 44.8
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 1.4e-06 58.2 88 31.8
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 1.9e-06 57.8 111 33.3
Hund02549 Selenicereus undatus HOM05D003636 ORTHO05D005160 3.2e-06 57.0 42 57.1
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 9.4e-06 55.5 86 31.4


User provided reference genes

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